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Processes

This page documents all processes in the pipeline.

Contents

QUANT

Defined in modules/quant/main.nf:2

Inputs

Name Type Description
val(id), path(fastq_1), path(fastq_2) tuple -

Outputs

Name Type Emit Description
quant_${id path - -

MULTIQC

Defined in modules/multiqc/main.nf:3

Inputs

Name Type Description
* path -

Outputs

Name Type Emit Description
multiqc_report.html path - -

INDEX

Defined in modules/index/main.nf:2

Outputs

Name Type Emit Description
index path - -

FASTQC

Defined in modules/fastqc/main.nf:3

Inputs

Name Type Description
val(id), path(fastq_1), path(fastq_2) tuple -

Outputs

Name Type Emit Description
fastqc_${id path - -

This pipeline was built with Nextflow. Documentation generated by nf-docs v0.1.0 on 2026-01-23 17:21:40 UTC.