SRA Explorer

This tool aims to make datasets within the Sequence Read Archive more accessible.

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Showing results.

Select relevant datasets and click add to collection. When you're finished, view all saved datasets with the button in the top right of the page, where you can copy the SRA URLs.


Title Accession Instrument Total Bases (Mb) Date Created
{{ x.title }} {{ x.accession }} {{ x.platform }} {{ x.total_bases }} {{ x.createdate | date:'dd MMM yyyy' }}

Saved Datasets

The following is a list of links to download the selected SRA files.

{{ x.url }}{{ nlChr }}

This list of bash curl commands to download each SRA file and save with a nicer filename, with the cleaned dataset title appended.

#!/usr/bin/env bash{{ nlChr }}curl -L {{ x.url }} -o {{ x.accession }}_{{ x.cleanTitle }}.sra

This list of URLs is followed by a nicer filename, with the cleaned dataset title appended. This is suitable for use with the Cluster Flow --file_list download option.

{{ x.url }}{{ tabChr }}{{ x.accession }}_{{ x.cleanTitle }}.sra{{ nlChr }}

Query URL =