Equivalence Report

Test Case	File	Args	Text	Images
minimal_default	`minimal.fastq`	(default)	9/9	8/8
minimal_nogroup	`minimal.fastq`	`--nogroup`	9/9	8/8
minimal_expgroup	`minimal.fastq`	`--expgroup`	9/9	8/8
minimal_casava	`minimal.fastq`	`--casava`	9/9	8/8
minimal_casava_nofilter	`minimal.fastq`	`--casava` `--nofilter`	9/9	8/8
minimal_kmers5	`minimal.fastq`	`--kmers` `5`	9/9	8/8
minimal_kmers10	`minimal.fastq`	`--kmers` `10`	9/9	8/8
minimal_min_length_10	`minimal.fastq`	`--min_length` `10`	9/9	8/8
minimal_dup_length_10	`minimal.fastq`	`--dup_length` `10`	9/9	8/8
complex_default	`complex.fastq`	(default)	9/9	8/8
complex_nogroup	`complex.fastq`	`--nogroup`	9/9	8/8
complex_expgroup	`complex.fastq`	`--expgroup`	9/9	8/8
complex_casava	`complex.fastq`	`--casava`	9/9	8/8
complex_casava_nofilter	`complex.fastq`	`--casava` `--nofilter`	9/9	8/8
complex_kmers5	`complex.fastq`	`--kmers` `5`	9/9	8/8
complex_kmers10	`complex.fastq`	`--kmers` `10`	9/9	8/8
complex_min_length_10	`complex.fastq`	`--min_length` `10`	9/9	8/8
complex_dup_length_10	`complex.fastq`	`--dup_length` `10`	9/9	8/8
realistic_default	`realistic.fastq.gz`	(default)	9/9	8/8

minimal_default PASS

Input: minimal.fastq | Args: (default)

File	Java	Rust	Status
fastqc.fo	✓	✓	✓ Identical
fastqc_data.txt	✓	✓	✓ Identical
fastqc_report.html	✓	✓	✓ Expected diff
base64-encoded PNG images replaced with placeholders
summary.txt	✓	✓	✓ Identical
Icons/error.png	✓	✓	✓ Identical
Icons/fastqc_icon.png	✓	✓	✓ Identical
Icons/tick.png	✓	✓	✓ Identical
Icons/warning.png	✓	✓	✓ Identical
Images/adapter_content.png	✓	✓	✓ Diff within limits (2.4% pixels differ)
Total: 480000 px \| Differ: 11538 (2.40%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/adapter_content.svg	✓	✓	✓ Expected diff (18 lines patched)
Identical after applying patch: --- java/Images/adapter_content.svg +++ rust/Images/adapter_content.svg @@ -17,7 +17,7 @@ <text x="380" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">% Adapter</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="150" height="520" x="180" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="250" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -60,12 +60,12 @@ <line x1="260" y1="560" x2="410" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> <line x1="410" y1="560" x2="560" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> <line x1="560" y1="560" x2="710" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> -<rect width="220" height="123" x="570" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="220" height="123" x="570" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="580" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Illumina Universal Adapter</text> -<text x="580" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Illumina Small RNA 3' Adapter</text> -<text x="580" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">Illumina Small RNA 5' Adapter</text> -<text x="580" y="115" fill="rgb(221,204,119)" font-family="[FONT]" font-size="12">Nextera Transposase Sequence</text> -<text x="580" y="135" fill="rgb(68,170,153)" font-family="[FONT]" font-size="12">PolyA</text> -<text x="580" y="155" fill="rgb(170,68,153)" font-family="[FONT]" font-size="12">PolyG</text> +<rect width="200" height="123" x="590" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="200" height="123" x="590" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="600" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Illumina Universal Adapter</text> +<text x="600" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Illumina Small RNA 3' Adapter</text> +<text x="600" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">Illumina Small RNA 5' Adapter</text> +<text x="600" y="115" fill="rgb(221,204,119)" font-family="[FONT]" font-size="12">Nextera Transposase Sequence</text> +<text x="600" y="135" fill="rgb(68,170,153)" font-family="[FONT]" font-size="12">PolyA</text> +<text x="600" y="155" fill="rgb(170,68,153)" font-family="[FONT]" font-size="12">PolyG</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/duplication_levels.png	✓	✓	✓ Diff within limits (1.8% pixels differ)
Total: 480000 px \| Differ: 8534 (1.78%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/duplication_levels.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/duplication_levels.svg +++ rust/Images/duplication_levels.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="260" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Percent of seqs remaining if deduplicated 100%</text> +<text x="270" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Percent of seqs remaining if deduplicated 100%</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="310" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> +<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -68,7 +68,7 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="130" height="23" x="660" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="130" height="23" x="660" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="660" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> +<rect width="110" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="110" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="680" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_n_content.png	✓	✓	✓ Diff within limits (1.0% pixels differ)
Total: 480000 px \| Differ: 4893 (1.02%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_n_content.svg	✓	✓	✓ Expected diff (8 lines patched)
Identical after applying patch: --- java/Images/per_base_n_content.svg +++ rust/Images/per_base_n_content.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="320" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">N content across all bases</text> +<text x="330" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">N content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -68,7 +68,7 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="30" height="23" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="30" height="23" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="23" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="23" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%N</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_quality.png	✓	✓	✓ Diff within limits (1.2% pixels differ)
Total: 480000 px \| Differ: 5740 (1.20%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_quality.svg	✓	✓	✓ Expected diff (2 lines patched)
Identical after applying patch: --- java/Images/per_base_quality.svg +++ rust/Images/per_base_quality.svg @@ -88,7 +88,7 @@ <text x="760" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">16</text> <line x1="20" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="20" y1="560" x2="20" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <rect width="40" height="0" x="20" y="560" style="fill:rgb(240,240,0);stroke:none"/> <rect width="40" height="0" x="20" y="560" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(0,0,0)"/> <line x1="40" y1="560" x2="40" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_sequence_content.png	✓	✓	✓ Diff within limits (1.5% pixels differ)
Total: 480000 px \| Differ: 7272 (1.52%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_sequence_content.svg	✓	✓	✓ Expected diff (8 lines patched)
Identical after applying patch: --- java/Images/per_base_sequence_content.svg +++ rust/Images/per_base_sequence_content.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="300" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence content across all bases</text> +<text x="310" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -113,8 +113,8 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> -<rect width="30" height="83" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="30" height="83" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="83" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="83" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%T</text> <text x="770" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">%C</text> <text x="770" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">%A</text> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_gc_content.png	✓	✓	✓ Diff within limits (1.9% pixels differ)
Total: 480000 px \| Differ: 9323 (1.94%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_gc_content.svg	✓	✓	✓ Expected diff (12 lines patched)
Identical after applying patch: --- java/Images/per_sequence_gc_content.svg +++ rust/Images/per_sequence_gc_content.svg @@ -5,10 +5,10 @@ <rect width="800" height="600" x="0" y="0" style="fill:rgb(255,255,255);stroke:none"/> <text x="0" y="566" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> -<text x="290" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">GC distribution over all sequences</text> +<text x="300" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">GC distribution over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> <text x="10" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <rect width="10" height="520" x="20" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="30" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -289,8 +289,8 @@ <line x1="700" y1="560" x2="700" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="700" y1="560" x2="710" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="720" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> -<rect width="160" height="43" x="630" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="160" height="43" x="630" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="630" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">GC count per read</text> -<text x="630" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Theoretical Distribution</text> +<rect width="150" height="43" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="43" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">GC count per read</text> +<text x="640" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Theoretical Distribution</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_quality.png	✓	✓	✓ Diff within limits (0.8% pixels differ)
Total: 480000 px \| Differ: 3824 (0.80%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_quality.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/per_sequence_quality.svg +++ rust/Images/per_sequence_quality.svg @@ -5,14 +5,14 @@ <rect width="800" height="600" x="0" y="0" style="fill:rgb(255,255,255);stroke:none"/> <text x="0" y="566" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> -<text x="260" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> +<text x="270" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="280" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> +<text x="300" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> <text x="400" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">9</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="10" y1="40" x2="790" y2="40" stroke="rgb(180,180,180)" stroke-width="[SW]"/> -<rect width="170" height="23" x="620" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="170" height="23" x="620" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="620" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> +<rect width="150" height="23" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="23" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/sequence_length_distribution.png	✓	✓	✓ Diff within limits (1.5% pixels differ)
Total: 480000 px \| Differ: 7035 (1.47%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/sequence_length_distribution.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/sequence_length_distribution.svg +++ rust/Images/sequence_length_distribution.svg @@ -5,10 +5,10 @@ <rect width="800" height="600" x="0" y="0" style="fill:rgb(255,255,255);stroke:none"/> <text x="0" y="566" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> -<text x="240" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Distribution of sequence lengths over all sequences</text> +<text x="250" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Distribution of sequence lengths over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Length (bp)</text> +<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Length (bp)</text> <text x="130" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">15</text> <rect width="260" height="520" x="270" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="390" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">16</text> @@ -17,7 +17,7 @@ <line x1="10" y1="40" x2="790" y2="40" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="140" y1="560" x2="400" y2="40" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="400" y1="40" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="120" height="23" x="670" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="120" height="23" x="670" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="670" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> +<rect width="100" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="100" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="690" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust

minimal_nogroup PASS

Input: minimal.fastq | Args: --nogroup

File	Java	Rust	Status
fastqc.fo	✓	✓	✓ Identical
fastqc_data.txt	✓	✓	✓ Identical
fastqc_report.html	✓	✓	✓ Expected diff
base64-encoded PNG images replaced with placeholders
summary.txt	✓	✓	✓ Identical
Icons/error.png	✓	✓	✓ Identical
Icons/fastqc_icon.png	✓	✓	✓ Identical
Icons/tick.png	✓	✓	✓ Identical
Icons/warning.png	✓	✓	✓ Identical
Images/adapter_content.png	✓	✓	✓ Diff within limits (2.4% pixels differ)
Total: 480000 px \| Differ: 11538 (2.40%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/adapter_content.svg	✓	✓	✓ Expected diff (18 lines patched)
Identical after applying patch: --- java/Images/adapter_content.svg +++ rust/Images/adapter_content.svg @@ -17,7 +17,7 @@ <text x="380" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">% Adapter</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="150" height="520" x="180" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="250" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -60,12 +60,12 @@ <line x1="260" y1="560" x2="410" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> <line x1="410" y1="560" x2="560" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> <line x1="560" y1="560" x2="710" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> -<rect width="220" height="123" x="570" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="220" height="123" x="570" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="580" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Illumina Universal Adapter</text> -<text x="580" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Illumina Small RNA 3' Adapter</text> -<text x="580" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">Illumina Small RNA 5' Adapter</text> -<text x="580" y="115" fill="rgb(221,204,119)" font-family="[FONT]" font-size="12">Nextera Transposase Sequence</text> -<text x="580" y="135" fill="rgb(68,170,153)" font-family="[FONT]" font-size="12">PolyA</text> -<text x="580" y="155" fill="rgb(170,68,153)" font-family="[FONT]" font-size="12">PolyG</text> +<rect width="200" height="123" x="590" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="200" height="123" x="590" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="600" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Illumina Universal Adapter</text> +<text x="600" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Illumina Small RNA 3' Adapter</text> +<text x="600" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">Illumina Small RNA 5' Adapter</text> +<text x="600" y="115" fill="rgb(221,204,119)" font-family="[FONT]" font-size="12">Nextera Transposase Sequence</text> +<text x="600" y="135" fill="rgb(68,170,153)" font-family="[FONT]" font-size="12">PolyA</text> +<text x="600" y="155" fill="rgb(170,68,153)" font-family="[FONT]" font-size="12">PolyG</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/duplication_levels.png	✓	✓	✓ Diff within limits (1.8% pixels differ)
Total: 480000 px \| Differ: 8534 (1.78%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/duplication_levels.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/duplication_levels.svg +++ rust/Images/duplication_levels.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="260" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Percent of seqs remaining if deduplicated 100%</text> +<text x="270" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Percent of seqs remaining if deduplicated 100%</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="310" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> +<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -68,7 +68,7 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="130" height="23" x="660" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="130" height="23" x="660" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="660" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> +<rect width="110" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="110" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="680" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_n_content.png	✓	✓	✓ Diff within limits (1.0% pixels differ)
Total: 480000 px \| Differ: 4893 (1.02%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_n_content.svg	✓	✓	✓ Expected diff (8 lines patched)
Identical after applying patch: --- java/Images/per_base_n_content.svg +++ rust/Images/per_base_n_content.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="320" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">N content across all bases</text> +<text x="330" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">N content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -68,7 +68,7 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="30" height="23" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="30" height="23" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="23" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="23" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%N</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_quality.png	✓	✓	✓ Diff within limits (1.2% pixels differ)
Total: 480000 px \| Differ: 5740 (1.20%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_quality.svg	✓	✓	✓ Expected diff (2 lines patched)
Identical after applying patch: --- java/Images/per_base_quality.svg +++ rust/Images/per_base_quality.svg @@ -88,7 +88,7 @@ <text x="760" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">16</text> <line x1="20" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="20" y1="560" x2="20" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <rect width="40" height="0" x="20" y="560" style="fill:rgb(240,240,0);stroke:none"/> <rect width="40" height="0" x="20" y="560" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(0,0,0)"/> <line x1="40" y1="560" x2="40" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_sequence_content.png	✓	✓	✓ Diff within limits (1.5% pixels differ)
Total: 480000 px \| Differ: 7272 (1.52%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_sequence_content.svg	✓	✓	✓ Expected diff (8 lines patched)
Identical after applying patch: --- java/Images/per_base_sequence_content.svg +++ rust/Images/per_base_sequence_content.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="300" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence content across all bases</text> +<text x="310" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -113,8 +113,8 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> -<rect width="30" height="83" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="30" height="83" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="83" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="83" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%T</text> <text x="770" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">%C</text> <text x="770" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">%A</text> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_gc_content.png	✓	✓	✓ Diff within limits (1.9% pixels differ)
Total: 480000 px \| Differ: 9323 (1.94%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_gc_content.svg	✓	✓	✓ Expected diff (12 lines patched)
Identical after applying patch: --- java/Images/per_sequence_gc_content.svg +++ rust/Images/per_sequence_gc_content.svg @@ -5,10 +5,10 @@ <rect width="800" height="600" x="0" y="0" style="fill:rgb(255,255,255);stroke:none"/> <text x="0" y="566" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> -<text x="290" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">GC distribution over all sequences</text> +<text x="300" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">GC distribution over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> <text x="10" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <rect width="10" height="520" x="20" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="30" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -289,8 +289,8 @@ <line x1="700" y1="560" x2="700" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="700" y1="560" x2="710" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="720" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> -<rect width="160" height="43" x="630" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="160" height="43" x="630" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="630" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">GC count per read</text> -<text x="630" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Theoretical Distribution</text> +<rect width="150" height="43" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="43" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">GC count per read</text> +<text x="640" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Theoretical Distribution</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_quality.png	✓	✓	✓ Diff within limits (0.8% pixels differ)
Total: 480000 px \| Differ: 3824 (0.80%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_quality.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/per_sequence_quality.svg +++ rust/Images/per_sequence_quality.svg @@ -5,14 +5,14 @@ <rect width="800" height="600" x="0" y="0" style="fill:rgb(255,255,255);stroke:none"/> <text x="0" y="566" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> -<text x="260" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> +<text x="270" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="280" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> +<text x="300" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> <text x="400" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">9</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="10" y1="40" x2="790" y2="40" stroke="rgb(180,180,180)" stroke-width="[SW]"/> -<rect width="170" height="23" x="620" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="170" height="23" x="620" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="620" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> +<rect width="150" height="23" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="23" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/sequence_length_distribution.png	✓	✓	✓ Diff within limits (1.5% pixels differ)
Total: 480000 px \| Differ: 7035 (1.47%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/sequence_length_distribution.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/sequence_length_distribution.svg +++ rust/Images/sequence_length_distribution.svg @@ -5,10 +5,10 @@ <rect width="800" height="600" x="0" y="0" style="fill:rgb(255,255,255);stroke:none"/> <text x="0" y="566" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> -<text x="240" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Distribution of sequence lengths over all sequences</text> +<text x="250" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Distribution of sequence lengths over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Length (bp)</text> +<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Length (bp)</text> <text x="130" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">15</text> <rect width="260" height="520" x="270" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="390" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">16</text> @@ -17,7 +17,7 @@ <line x1="10" y1="40" x2="790" y2="40" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="140" y1="560" x2="400" y2="40" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="400" y1="40" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="120" height="23" x="670" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="120" height="23" x="670" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="670" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> +<rect width="100" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="100" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="690" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust

minimal_expgroup PASS

Input: minimal.fastq | Args: --expgroup

File	Java	Rust	Status
fastqc.fo	✓	✓	✓ Identical
fastqc_data.txt	✓	✓	✓ Identical
fastqc_report.html	✓	✓	✓ Expected diff
base64-encoded PNG images replaced with placeholders
summary.txt	✓	✓	✓ Identical
Icons/error.png	✓	✓	✓ Identical
Icons/fastqc_icon.png	✓	✓	✓ Identical
Icons/tick.png	✓	✓	✓ Identical
Icons/warning.png	✓	✓	✓ Identical
Images/adapter_content.png	✓	✓	✓ Diff within limits (2.4% pixels differ)
Total: 480000 px \| Differ: 11538 (2.40%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/adapter_content.svg	✓	✓	✓ Expected diff (18 lines patched)
Identical after applying patch: --- java/Images/adapter_content.svg +++ rust/Images/adapter_content.svg @@ -17,7 +17,7 @@ <text x="380" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">% Adapter</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="150" height="520" x="180" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="250" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -60,12 +60,12 @@ <line x1="260" y1="560" x2="410" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> <line x1="410" y1="560" x2="560" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> <line x1="560" y1="560" x2="710" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> -<rect width="220" height="123" x="570" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="220" height="123" x="570" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="580" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Illumina Universal Adapter</text> -<text x="580" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Illumina Small RNA 3' Adapter</text> -<text x="580" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">Illumina Small RNA 5' Adapter</text> -<text x="580" y="115" fill="rgb(221,204,119)" font-family="[FONT]" font-size="12">Nextera Transposase Sequence</text> -<text x="580" y="135" fill="rgb(68,170,153)" font-family="[FONT]" font-size="12">PolyA</text> -<text x="580" y="155" fill="rgb(170,68,153)" font-family="[FONT]" font-size="12">PolyG</text> +<rect width="200" height="123" x="590" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="200" height="123" x="590" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="600" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Illumina Universal Adapter</text> +<text x="600" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Illumina Small RNA 3' Adapter</text> +<text x="600" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">Illumina Small RNA 5' Adapter</text> +<text x="600" y="115" fill="rgb(221,204,119)" font-family="[FONT]" font-size="12">Nextera Transposase Sequence</text> +<text x="600" y="135" fill="rgb(68,170,153)" font-family="[FONT]" font-size="12">PolyA</text> +<text x="600" y="155" fill="rgb(170,68,153)" font-family="[FONT]" font-size="12">PolyG</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/duplication_levels.png	✓	✓	✓ Diff within limits (1.8% pixels differ)
Total: 480000 px \| Differ: 8534 (1.78%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/duplication_levels.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/duplication_levels.svg +++ rust/Images/duplication_levels.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="260" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Percent of seqs remaining if deduplicated 100%</text> +<text x="270" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Percent of seqs remaining if deduplicated 100%</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="310" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> +<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -68,7 +68,7 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="130" height="23" x="660" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="130" height="23" x="660" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="660" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> +<rect width="110" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="110" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="680" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_n_content.png	✓	✓	✓ Diff within limits (1.0% pixels differ)
Total: 480000 px \| Differ: 4893 (1.02%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_n_content.svg	✓	✓	✓ Expected diff (8 lines patched)
Identical after applying patch: --- java/Images/per_base_n_content.svg +++ rust/Images/per_base_n_content.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="320" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">N content across all bases</text> +<text x="330" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">N content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -68,7 +68,7 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="30" height="23" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="30" height="23" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="23" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="23" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%N</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_quality.png	✓	✓	✓ Diff within limits (1.2% pixels differ)
Total: 480000 px \| Differ: 5740 (1.20%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_quality.svg	✓	✓	✓ Expected diff (2 lines patched)
Identical after applying patch: --- java/Images/per_base_quality.svg +++ rust/Images/per_base_quality.svg @@ -88,7 +88,7 @@ <text x="760" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">16</text> <line x1="20" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="20" y1="560" x2="20" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <rect width="40" height="0" x="20" y="560" style="fill:rgb(240,240,0);stroke:none"/> <rect width="40" height="0" x="20" y="560" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(0,0,0)"/> <line x1="40" y1="560" x2="40" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_sequence_content.png	✓	✓	✓ Diff within limits (1.5% pixels differ)
Total: 480000 px \| Differ: 7272 (1.52%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_sequence_content.svg	✓	✓	✓ Expected diff (8 lines patched)
Identical after applying patch: --- java/Images/per_base_sequence_content.svg +++ rust/Images/per_base_sequence_content.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="300" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence content across all bases</text> +<text x="310" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -113,8 +113,8 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> -<rect width="30" height="83" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="30" height="83" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="83" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="83" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%T</text> <text x="770" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">%C</text> <text x="770" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">%A</text> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_gc_content.png	✓	✓	✓ Diff within limits (1.9% pixels differ)
Total: 480000 px \| Differ: 9323 (1.94%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_gc_content.svg	✓	✓	✓ Expected diff (12 lines patched)
Identical after applying patch: --- java/Images/per_sequence_gc_content.svg +++ rust/Images/per_sequence_gc_content.svg @@ -5,10 +5,10 @@ <rect width="800" height="600" x="0" y="0" style="fill:rgb(255,255,255);stroke:none"/> <text x="0" y="566" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> -<text x="290" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">GC distribution over all sequences</text> +<text x="300" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">GC distribution over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> <text x="10" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <rect width="10" height="520" x="20" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="30" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -289,8 +289,8 @@ <line x1="700" y1="560" x2="700" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="700" y1="560" x2="710" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="720" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> -<rect width="160" height="43" x="630" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="160" height="43" x="630" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="630" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">GC count per read</text> -<text x="630" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Theoretical Distribution</text> +<rect width="150" height="43" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="43" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">GC count per read</text> +<text x="640" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Theoretical Distribution</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_quality.png	✓	✓	✓ Diff within limits (0.8% pixels differ)
Total: 480000 px \| Differ: 3824 (0.80%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_quality.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/per_sequence_quality.svg +++ rust/Images/per_sequence_quality.svg @@ -5,14 +5,14 @@ <rect width="800" height="600" x="0" y="0" style="fill:rgb(255,255,255);stroke:none"/> <text x="0" y="566" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> -<text x="260" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> +<text x="270" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="280" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> +<text x="300" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> <text x="400" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">9</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="10" y1="40" x2="790" y2="40" stroke="rgb(180,180,180)" stroke-width="[SW]"/> -<rect width="170" height="23" x="620" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="170" height="23" x="620" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="620" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> +<rect width="150" height="23" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="23" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/sequence_length_distribution.png	✓	✓	✓ Diff within limits (1.5% pixels differ)
Total: 480000 px \| Differ: 7035 (1.47%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/sequence_length_distribution.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/sequence_length_distribution.svg +++ rust/Images/sequence_length_distribution.svg @@ -5,10 +5,10 @@ <rect width="800" height="600" x="0" y="0" style="fill:rgb(255,255,255);stroke:none"/> <text x="0" y="566" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> -<text x="240" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Distribution of sequence lengths over all sequences</text> +<text x="250" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Distribution of sequence lengths over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Length (bp)</text> +<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Length (bp)</text> <text x="130" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">15</text> <rect width="260" height="520" x="270" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="390" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">16</text> @@ -17,7 +17,7 @@ <line x1="10" y1="40" x2="790" y2="40" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="140" y1="560" x2="400" y2="40" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="400" y1="40" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="120" height="23" x="670" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="120" height="23" x="670" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="670" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> +<rect width="100" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="100" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="690" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust

minimal_casava PASS

Input: minimal.fastq | Args: --casava

File	Java	Rust	Status
fastqc.fo	✓	✓	✓ Identical
fastqc_data.txt	✓	✓	✓ Identical
fastqc_report.html	✓	✓	✓ Expected diff
base64-encoded PNG images replaced with placeholders
summary.txt	✓	✓	✓ Identical
Icons/error.png	✓	✓	✓ Identical
Icons/fastqc_icon.png	✓	✓	✓ Identical
Icons/tick.png	✓	✓	✓ Identical
Icons/warning.png	✓	✓	✓ Identical
Images/adapter_content.png	✓	✓	✓ Diff within limits (2.4% pixels differ)
Total: 480000 px \| Differ: 11538 (2.40%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/adapter_content.svg	✓	✓	✓ Expected diff (18 lines patched)
Identical after applying patch: --- java/Images/adapter_content.svg +++ rust/Images/adapter_content.svg @@ -17,7 +17,7 @@ <text x="380" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">% Adapter</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="150" height="520" x="180" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="250" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -60,12 +60,12 @@ <line x1="260" y1="560" x2="410" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> <line x1="410" y1="560" x2="560" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> <line x1="560" y1="560" x2="710" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> -<rect width="220" height="123" x="570" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="220" height="123" x="570" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="580" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Illumina Universal Adapter</text> -<text x="580" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Illumina Small RNA 3' Adapter</text> -<text x="580" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">Illumina Small RNA 5' Adapter</text> -<text x="580" y="115" fill="rgb(221,204,119)" font-family="[FONT]" font-size="12">Nextera Transposase Sequence</text> -<text x="580" y="135" fill="rgb(68,170,153)" font-family="[FONT]" font-size="12">PolyA</text> -<text x="580" y="155" fill="rgb(170,68,153)" font-family="[FONT]" font-size="12">PolyG</text> +<rect width="200" height="123" x="590" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="200" height="123" x="590" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="600" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Illumina Universal Adapter</text> +<text x="600" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Illumina Small RNA 3' Adapter</text> +<text x="600" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">Illumina Small RNA 5' Adapter</text> +<text x="600" y="115" fill="rgb(221,204,119)" font-family="[FONT]" font-size="12">Nextera Transposase Sequence</text> +<text x="600" y="135" fill="rgb(68,170,153)" font-family="[FONT]" font-size="12">PolyA</text> +<text x="600" y="155" fill="rgb(170,68,153)" font-family="[FONT]" font-size="12">PolyG</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/duplication_levels.png	✓	✓	✓ Diff within limits (1.8% pixels differ)
Total: 480000 px \| Differ: 8534 (1.78%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/duplication_levels.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/duplication_levels.svg +++ rust/Images/duplication_levels.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="260" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Percent of seqs remaining if deduplicated 100%</text> +<text x="270" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Percent of seqs remaining if deduplicated 100%</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="310" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> +<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -68,7 +68,7 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="130" height="23" x="660" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="130" height="23" x="660" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="660" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> +<rect width="110" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="110" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="680" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_n_content.png	✓	✓	✓ Diff within limits (1.0% pixels differ)
Total: 480000 px \| Differ: 4893 (1.02%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_n_content.svg	✓	✓	✓ Expected diff (8 lines patched)
Identical after applying patch: --- java/Images/per_base_n_content.svg +++ rust/Images/per_base_n_content.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="320" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">N content across all bases</text> +<text x="330" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">N content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -68,7 +68,7 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="30" height="23" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="30" height="23" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="23" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="23" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%N</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_quality.png	✓	✓	✓ Diff within limits (1.2% pixels differ)
Total: 480000 px \| Differ: 5740 (1.20%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_quality.svg	✓	✓	✓ Expected diff (2 lines patched)
Identical after applying patch: --- java/Images/per_base_quality.svg +++ rust/Images/per_base_quality.svg @@ -88,7 +88,7 @@ <text x="760" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">16</text> <line x1="20" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="20" y1="560" x2="20" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <rect width="40" height="0" x="20" y="560" style="fill:rgb(240,240,0);stroke:none"/> <rect width="40" height="0" x="20" y="560" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(0,0,0)"/> <line x1="40" y1="560" x2="40" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_sequence_content.png	✓	✓	✓ Diff within limits (1.5% pixels differ)
Total: 480000 px \| Differ: 7272 (1.52%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_sequence_content.svg	✓	✓	✓ Expected diff (8 lines patched)
Identical after applying patch: --- java/Images/per_base_sequence_content.svg +++ rust/Images/per_base_sequence_content.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="300" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence content across all bases</text> +<text x="310" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -113,8 +113,8 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> -<rect width="30" height="83" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="30" height="83" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="83" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="83" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%T</text> <text x="770" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">%C</text> <text x="770" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">%A</text> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_gc_content.png	✓	✓	✓ Diff within limits (1.9% pixels differ)
Total: 480000 px \| Differ: 9323 (1.94%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_gc_content.svg	✓	✓	✓ Expected diff (12 lines patched)
Identical after applying patch: --- java/Images/per_sequence_gc_content.svg +++ rust/Images/per_sequence_gc_content.svg @@ -5,10 +5,10 @@ <rect width="800" height="600" x="0" y="0" style="fill:rgb(255,255,255);stroke:none"/> <text x="0" y="566" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> -<text x="290" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">GC distribution over all sequences</text> +<text x="300" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">GC distribution over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> <text x="10" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <rect width="10" height="520" x="20" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="30" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -289,8 +289,8 @@ <line x1="700" y1="560" x2="700" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="700" y1="560" x2="710" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="720" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> -<rect width="160" height="43" x="630" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="160" height="43" x="630" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="630" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">GC count per read</text> -<text x="630" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Theoretical Distribution</text> +<rect width="150" height="43" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="43" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">GC count per read</text> +<text x="640" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Theoretical Distribution</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_quality.png	✓	✓	✓ Diff within limits (0.8% pixels differ)
Total: 480000 px \| Differ: 3824 (0.80%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_quality.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/per_sequence_quality.svg +++ rust/Images/per_sequence_quality.svg @@ -5,14 +5,14 @@ <rect width="800" height="600" x="0" y="0" style="fill:rgb(255,255,255);stroke:none"/> <text x="0" y="566" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> -<text x="260" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> +<text x="270" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="280" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> +<text x="300" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> <text x="400" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">9</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="10" y1="40" x2="790" y2="40" stroke="rgb(180,180,180)" stroke-width="[SW]"/> -<rect width="170" height="23" x="620" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="170" height="23" x="620" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="620" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> +<rect width="150" height="23" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="23" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/sequence_length_distribution.png	✓	✓	✓ Diff within limits (1.5% pixels differ)
Total: 480000 px \| Differ: 7035 (1.47%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/sequence_length_distribution.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/sequence_length_distribution.svg +++ rust/Images/sequence_length_distribution.svg @@ -5,10 +5,10 @@ <rect width="800" height="600" x="0" y="0" style="fill:rgb(255,255,255);stroke:none"/> <text x="0" y="566" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> -<text x="240" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Distribution of sequence lengths over all sequences</text> +<text x="250" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Distribution of sequence lengths over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Length (bp)</text> +<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Length (bp)</text> <text x="130" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">15</text> <rect width="260" height="520" x="270" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="390" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">16</text> @@ -17,7 +17,7 @@ <line x1="10" y1="40" x2="790" y2="40" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="140" y1="560" x2="400" y2="40" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="400" y1="40" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="120" height="23" x="670" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="120" height="23" x="670" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="670" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> +<rect width="100" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="100" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="690" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust

minimal_casava_nofilter PASS

Input: minimal.fastq | Args: --casava --nofilter

File	Java	Rust	Status
fastqc.fo	✓	✓	✓ Identical
fastqc_data.txt	✓	✓	✓ Identical
fastqc_report.html	✓	✓	✓ Expected diff
base64-encoded PNG images replaced with placeholders
summary.txt	✓	✓	✓ Identical
Icons/error.png	✓	✓	✓ Identical
Icons/fastqc_icon.png	✓	✓	✓ Identical
Icons/tick.png	✓	✓	✓ Identical
Icons/warning.png	✓	✓	✓ Identical
Images/adapter_content.png	✓	✓	✓ Diff within limits (2.4% pixels differ)
Total: 480000 px \| Differ: 11538 (2.40%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/adapter_content.svg	✓	✓	✓ Expected diff (18 lines patched)
Identical after applying patch: --- java/Images/adapter_content.svg +++ rust/Images/adapter_content.svg @@ -17,7 +17,7 @@ <text x="380" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">% Adapter</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="150" height="520" x="180" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="250" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -60,12 +60,12 @@ <line x1="260" y1="560" x2="410" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> <line x1="410" y1="560" x2="560" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> <line x1="560" y1="560" x2="710" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> -<rect width="220" height="123" x="570" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="220" height="123" x="570" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="580" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Illumina Universal Adapter</text> -<text x="580" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Illumina Small RNA 3' Adapter</text> -<text x="580" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">Illumina Small RNA 5' Adapter</text> -<text x="580" y="115" fill="rgb(221,204,119)" font-family="[FONT]" font-size="12">Nextera Transposase Sequence</text> -<text x="580" y="135" fill="rgb(68,170,153)" font-family="[FONT]" font-size="12">PolyA</text> -<text x="580" y="155" fill="rgb(170,68,153)" font-family="[FONT]" font-size="12">PolyG</text> +<rect width="200" height="123" x="590" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="200" height="123" x="590" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="600" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Illumina Universal Adapter</text> +<text x="600" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Illumina Small RNA 3' Adapter</text> +<text x="600" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">Illumina Small RNA 5' Adapter</text> +<text x="600" y="115" fill="rgb(221,204,119)" font-family="[FONT]" font-size="12">Nextera Transposase Sequence</text> +<text x="600" y="135" fill="rgb(68,170,153)" font-family="[FONT]" font-size="12">PolyA</text> +<text x="600" y="155" fill="rgb(170,68,153)" font-family="[FONT]" font-size="12">PolyG</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/duplication_levels.png	✓	✓	✓ Diff within limits (1.8% pixels differ)
Total: 480000 px \| Differ: 8534 (1.78%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/duplication_levels.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/duplication_levels.svg +++ rust/Images/duplication_levels.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="260" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Percent of seqs remaining if deduplicated 100%</text> +<text x="270" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Percent of seqs remaining if deduplicated 100%</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="310" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> +<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -68,7 +68,7 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="130" height="23" x="660" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="130" height="23" x="660" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="660" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> +<rect width="110" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="110" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="680" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_n_content.png	✓	✓	✓ Diff within limits (1.0% pixels differ)
Total: 480000 px \| Differ: 4893 (1.02%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_n_content.svg	✓	✓	✓ Expected diff (8 lines patched)
Identical after applying patch: --- java/Images/per_base_n_content.svg +++ rust/Images/per_base_n_content.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="320" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">N content across all bases</text> +<text x="330" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">N content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -68,7 +68,7 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="30" height="23" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="30" height="23" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="23" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="23" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%N</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_quality.png	✓	✓	✓ Diff within limits (1.2% pixels differ)
Total: 480000 px \| Differ: 5740 (1.20%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_quality.svg	✓	✓	✓ Expected diff (2 lines patched)
Identical after applying patch: --- java/Images/per_base_quality.svg +++ rust/Images/per_base_quality.svg @@ -88,7 +88,7 @@ <text x="760" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">16</text> <line x1="20" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="20" y1="560" x2="20" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <rect width="40" height="0" x="20" y="560" style="fill:rgb(240,240,0);stroke:none"/> <rect width="40" height="0" x="20" y="560" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(0,0,0)"/> <line x1="40" y1="560" x2="40" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_sequence_content.png	✓	✓	✓ Diff within limits (1.5% pixels differ)
Total: 480000 px \| Differ: 7272 (1.52%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_sequence_content.svg	✓	✓	✓ Expected diff (8 lines patched)
Identical after applying patch: --- java/Images/per_base_sequence_content.svg +++ rust/Images/per_base_sequence_content.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="300" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence content across all bases</text> +<text x="310" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -113,8 +113,8 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> -<rect width="30" height="83" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="30" height="83" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="83" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="83" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%T</text> <text x="770" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">%C</text> <text x="770" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">%A</text> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_gc_content.png	✓	✓	✓ Diff within limits (1.9% pixels differ)
Total: 480000 px \| Differ: 9323 (1.94%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_gc_content.svg	✓	✓	✓ Expected diff (12 lines patched)
Identical after applying patch: --- java/Images/per_sequence_gc_content.svg +++ rust/Images/per_sequence_gc_content.svg @@ -5,10 +5,10 @@ <rect width="800" height="600" x="0" y="0" style="fill:rgb(255,255,255);stroke:none"/> <text x="0" y="566" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> -<text x="290" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">GC distribution over all sequences</text> +<text x="300" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">GC distribution over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> <text x="10" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <rect width="10" height="520" x="20" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="30" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -289,8 +289,8 @@ <line x1="700" y1="560" x2="700" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="700" y1="560" x2="710" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="720" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> -<rect width="160" height="43" x="630" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="160" height="43" x="630" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="630" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">GC count per read</text> -<text x="630" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Theoretical Distribution</text> +<rect width="150" height="43" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="43" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">GC count per read</text> +<text x="640" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Theoretical Distribution</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_quality.png	✓	✓	✓ Diff within limits (0.8% pixels differ)
Total: 480000 px \| Differ: 3824 (0.80%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_quality.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/per_sequence_quality.svg +++ rust/Images/per_sequence_quality.svg @@ -5,14 +5,14 @@ <rect width="800" height="600" x="0" y="0" style="fill:rgb(255,255,255);stroke:none"/> <text x="0" y="566" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> -<text x="260" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> +<text x="270" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="280" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> +<text x="300" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> <text x="400" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">9</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="10" y1="40" x2="790" y2="40" stroke="rgb(180,180,180)" stroke-width="[SW]"/> -<rect width="170" height="23" x="620" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="170" height="23" x="620" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="620" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> +<rect width="150" height="23" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="23" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/sequence_length_distribution.png	✓	✓	✓ Diff within limits (1.5% pixels differ)
Total: 480000 px \| Differ: 7035 (1.47%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/sequence_length_distribution.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/sequence_length_distribution.svg +++ rust/Images/sequence_length_distribution.svg @@ -5,10 +5,10 @@ <rect width="800" height="600" x="0" y="0" style="fill:rgb(255,255,255);stroke:none"/> <text x="0" y="566" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> -<text x="240" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Distribution of sequence lengths over all sequences</text> +<text x="250" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Distribution of sequence lengths over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Length (bp)</text> +<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Length (bp)</text> <text x="130" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">15</text> <rect width="260" height="520" x="270" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="390" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">16</text> @@ -17,7 +17,7 @@ <line x1="10" y1="40" x2="790" y2="40" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="140" y1="560" x2="400" y2="40" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="400" y1="40" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="120" height="23" x="670" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="120" height="23" x="670" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="670" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> +<rect width="100" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="100" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="690" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust

minimal_kmers5 PASS

Input: minimal.fastq | Args: --kmers 5

File	Java	Rust	Status
fastqc.fo	✓	✓	✓ Identical
fastqc_data.txt	✓	✓	✓ Identical
fastqc_report.html	✓	✓	✓ Expected diff
base64-encoded PNG images replaced with placeholders
summary.txt	✓	✓	✓ Identical
Icons/error.png	✓	✓	✓ Identical
Icons/fastqc_icon.png	✓	✓	✓ Identical
Icons/tick.png	✓	✓	✓ Identical
Icons/warning.png	✓	✓	✓ Identical
Images/adapter_content.png	✓	✓	✓ Diff within limits (2.4% pixels differ)
Total: 480000 px \| Differ: 11538 (2.40%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/adapter_content.svg	✓	✓	✓ Expected diff (18 lines patched)
Identical after applying patch: --- java/Images/adapter_content.svg +++ rust/Images/adapter_content.svg @@ -17,7 +17,7 @@ <text x="380" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">% Adapter</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="150" height="520" x="180" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="250" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -60,12 +60,12 @@ <line x1="260" y1="560" x2="410" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> <line x1="410" y1="560" x2="560" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> <line x1="560" y1="560" x2="710" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> -<rect width="220" height="123" x="570" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="220" height="123" x="570" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="580" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Illumina Universal Adapter</text> -<text x="580" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Illumina Small RNA 3' Adapter</text> -<text x="580" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">Illumina Small RNA 5' Adapter</text> -<text x="580" y="115" fill="rgb(221,204,119)" font-family="[FONT]" font-size="12">Nextera Transposase Sequence</text> -<text x="580" y="135" fill="rgb(68,170,153)" font-family="[FONT]" font-size="12">PolyA</text> -<text x="580" y="155" fill="rgb(170,68,153)" font-family="[FONT]" font-size="12">PolyG</text> +<rect width="200" height="123" x="590" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="200" height="123" x="590" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="600" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Illumina Universal Adapter</text> +<text x="600" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Illumina Small RNA 3' Adapter</text> +<text x="600" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">Illumina Small RNA 5' Adapter</text> +<text x="600" y="115" fill="rgb(221,204,119)" font-family="[FONT]" font-size="12">Nextera Transposase Sequence</text> +<text x="600" y="135" fill="rgb(68,170,153)" font-family="[FONT]" font-size="12">PolyA</text> +<text x="600" y="155" fill="rgb(170,68,153)" font-family="[FONT]" font-size="12">PolyG</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/duplication_levels.png	✓	✓	✓ Diff within limits (1.8% pixels differ)
Total: 480000 px \| Differ: 8534 (1.78%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/duplication_levels.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/duplication_levels.svg +++ rust/Images/duplication_levels.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="260" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Percent of seqs remaining if deduplicated 100%</text> +<text x="270" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Percent of seqs remaining if deduplicated 100%</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="310" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> +<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -68,7 +68,7 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="130" height="23" x="660" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="130" height="23" x="660" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="660" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> +<rect width="110" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="110" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="680" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_n_content.png	✓	✓	✓ Diff within limits (1.0% pixels differ)
Total: 480000 px \| Differ: 4893 (1.02%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_n_content.svg	✓	✓	✓ Expected diff (8 lines patched)
Identical after applying patch: --- java/Images/per_base_n_content.svg +++ rust/Images/per_base_n_content.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="320" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">N content across all bases</text> +<text x="330" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">N content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -68,7 +68,7 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="30" height="23" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="30" height="23" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="23" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="23" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%N</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_quality.png	✓	✓	✓ Diff within limits (1.2% pixels differ)
Total: 480000 px \| Differ: 5740 (1.20%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_quality.svg	✓	✓	✓ Expected diff (2 lines patched)
Identical after applying patch: --- java/Images/per_base_quality.svg +++ rust/Images/per_base_quality.svg @@ -88,7 +88,7 @@ <text x="760" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">16</text> <line x1="20" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="20" y1="560" x2="20" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <rect width="40" height="0" x="20" y="560" style="fill:rgb(240,240,0);stroke:none"/> <rect width="40" height="0" x="20" y="560" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(0,0,0)"/> <line x1="40" y1="560" x2="40" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_sequence_content.png	✓	✓	✓ Diff within limits (1.5% pixels differ)
Total: 480000 px \| Differ: 7272 (1.52%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_sequence_content.svg	✓	✓	✓ Expected diff (8 lines patched)
Identical after applying patch: --- java/Images/per_base_sequence_content.svg +++ rust/Images/per_base_sequence_content.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="300" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence content across all bases</text> +<text x="310" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -113,8 +113,8 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> -<rect width="30" height="83" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="30" height="83" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="83" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="83" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%T</text> <text x="770" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">%C</text> <text x="770" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">%A</text> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_gc_content.png	✓	✓	✓ Diff within limits (1.9% pixels differ)
Total: 480000 px \| Differ: 9323 (1.94%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_gc_content.svg	✓	✓	✓ Expected diff (12 lines patched)
Identical after applying patch: --- java/Images/per_sequence_gc_content.svg +++ rust/Images/per_sequence_gc_content.svg @@ -5,10 +5,10 @@ <rect width="800" height="600" x="0" y="0" style="fill:rgb(255,255,255);stroke:none"/> <text x="0" y="566" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> -<text x="290" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">GC distribution over all sequences</text> +<text x="300" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">GC distribution over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> <text x="10" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <rect width="10" height="520" x="20" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="30" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -289,8 +289,8 @@ <line x1="700" y1="560" x2="700" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="700" y1="560" x2="710" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="720" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> -<rect width="160" height="43" x="630" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="160" height="43" x="630" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="630" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">GC count per read</text> -<text x="630" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Theoretical Distribution</text> +<rect width="150" height="43" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="43" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">GC count per read</text> +<text x="640" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Theoretical Distribution</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_quality.png	✓	✓	✓ Diff within limits (0.8% pixels differ)
Total: 480000 px \| Differ: 3824 (0.80%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_quality.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/per_sequence_quality.svg +++ rust/Images/per_sequence_quality.svg @@ -5,14 +5,14 @@ <rect width="800" height="600" x="0" y="0" style="fill:rgb(255,255,255);stroke:none"/> <text x="0" y="566" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> -<text x="260" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> +<text x="270" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="280" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> +<text x="300" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> <text x="400" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">9</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="10" y1="40" x2="790" y2="40" stroke="rgb(180,180,180)" stroke-width="[SW]"/> -<rect width="170" height="23" x="620" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="170" height="23" x="620" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="620" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> +<rect width="150" height="23" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="23" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/sequence_length_distribution.png	✓	✓	✓ Diff within limits (1.5% pixels differ)
Total: 480000 px \| Differ: 7035 (1.47%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/sequence_length_distribution.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/sequence_length_distribution.svg +++ rust/Images/sequence_length_distribution.svg @@ -5,10 +5,10 @@ <rect width="800" height="600" x="0" y="0" style="fill:rgb(255,255,255);stroke:none"/> <text x="0" y="566" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> -<text x="240" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Distribution of sequence lengths over all sequences</text> +<text x="250" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Distribution of sequence lengths over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Length (bp)</text> +<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Length (bp)</text> <text x="130" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">15</text> <rect width="260" height="520" x="270" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="390" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">16</text> @@ -17,7 +17,7 @@ <line x1="10" y1="40" x2="790" y2="40" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="140" y1="560" x2="400" y2="40" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="400" y1="40" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="120" height="23" x="670" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="120" height="23" x="670" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="670" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> +<rect width="100" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="100" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="690" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust

minimal_kmers10 PASS

Input: minimal.fastq | Args: --kmers 10

File	Java	Rust	Status
fastqc.fo	✓	✓	✓ Identical
fastqc_data.txt	✓	✓	✓ Identical
fastqc_report.html	✓	✓	✓ Expected diff
base64-encoded PNG images replaced with placeholders
summary.txt	✓	✓	✓ Identical
Icons/error.png	✓	✓	✓ Identical
Icons/fastqc_icon.png	✓	✓	✓ Identical
Icons/tick.png	✓	✓	✓ Identical
Icons/warning.png	✓	✓	✓ Identical
Images/adapter_content.png	✓	✓	✓ Diff within limits (2.4% pixels differ)
Total: 480000 px \| Differ: 11538 (2.40%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/adapter_content.svg	✓	✓	✓ Expected diff (18 lines patched)
Identical after applying patch: --- java/Images/adapter_content.svg +++ rust/Images/adapter_content.svg @@ -17,7 +17,7 @@ <text x="380" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">% Adapter</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="150" height="520" x="180" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="250" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -60,12 +60,12 @@ <line x1="260" y1="560" x2="410" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> <line x1="410" y1="560" x2="560" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> <line x1="560" y1="560" x2="710" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> -<rect width="220" height="123" x="570" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="220" height="123" x="570" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="580" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Illumina Universal Adapter</text> -<text x="580" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Illumina Small RNA 3' Adapter</text> -<text x="580" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">Illumina Small RNA 5' Adapter</text> -<text x="580" y="115" fill="rgb(221,204,119)" font-family="[FONT]" font-size="12">Nextera Transposase Sequence</text> -<text x="580" y="135" fill="rgb(68,170,153)" font-family="[FONT]" font-size="12">PolyA</text> -<text x="580" y="155" fill="rgb(170,68,153)" font-family="[FONT]" font-size="12">PolyG</text> +<rect width="200" height="123" x="590" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="200" height="123" x="590" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="600" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Illumina Universal Adapter</text> +<text x="600" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Illumina Small RNA 3' Adapter</text> +<text x="600" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">Illumina Small RNA 5' Adapter</text> +<text x="600" y="115" fill="rgb(221,204,119)" font-family="[FONT]" font-size="12">Nextera Transposase Sequence</text> +<text x="600" y="135" fill="rgb(68,170,153)" font-family="[FONT]" font-size="12">PolyA</text> +<text x="600" y="155" fill="rgb(170,68,153)" font-family="[FONT]" font-size="12">PolyG</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/duplication_levels.png	✓	✓	✓ Diff within limits (1.8% pixels differ)
Total: 480000 px \| Differ: 8534 (1.78%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/duplication_levels.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/duplication_levels.svg +++ rust/Images/duplication_levels.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="260" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Percent of seqs remaining if deduplicated 100%</text> +<text x="270" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Percent of seqs remaining if deduplicated 100%</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="310" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> +<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -68,7 +68,7 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="130" height="23" x="660" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="130" height="23" x="660" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="660" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> +<rect width="110" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="110" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="680" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_n_content.png	✓	✓	✓ Diff within limits (1.0% pixels differ)
Total: 480000 px \| Differ: 4893 (1.02%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_n_content.svg	✓	✓	✓ Expected diff (8 lines patched)
Identical after applying patch: --- java/Images/per_base_n_content.svg +++ rust/Images/per_base_n_content.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="320" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">N content across all bases</text> +<text x="330" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">N content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -68,7 +68,7 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="30" height="23" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="30" height="23" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="23" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="23" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%N</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_quality.png	✓	✓	✓ Diff within limits (1.2% pixels differ)
Total: 480000 px \| Differ: 5740 (1.20%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_quality.svg	✓	✓	✓ Expected diff (2 lines patched)
Identical after applying patch: --- java/Images/per_base_quality.svg +++ rust/Images/per_base_quality.svg @@ -88,7 +88,7 @@ <text x="760" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">16</text> <line x1="20" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="20" y1="560" x2="20" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <rect width="40" height="0" x="20" y="560" style="fill:rgb(240,240,0);stroke:none"/> <rect width="40" height="0" x="20" y="560" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(0,0,0)"/> <line x1="40" y1="560" x2="40" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_sequence_content.png	✓	✓	✓ Diff within limits (1.5% pixels differ)
Total: 480000 px \| Differ: 7272 (1.52%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_sequence_content.svg	✓	✓	✓ Expected diff (8 lines patched)
Identical after applying patch: --- java/Images/per_base_sequence_content.svg +++ rust/Images/per_base_sequence_content.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="300" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence content across all bases</text> +<text x="310" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -113,8 +113,8 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> -<rect width="30" height="83" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="30" height="83" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="83" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="83" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%T</text> <text x="770" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">%C</text> <text x="770" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">%A</text> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_gc_content.png	✓	✓	✓ Diff within limits (1.9% pixels differ)
Total: 480000 px \| Differ: 9323 (1.94%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_gc_content.svg	✓	✓	✓ Expected diff (12 lines patched)
Identical after applying patch: --- java/Images/per_sequence_gc_content.svg +++ rust/Images/per_sequence_gc_content.svg @@ -5,10 +5,10 @@ <rect width="800" height="600" x="0" y="0" style="fill:rgb(255,255,255);stroke:none"/> <text x="0" y="566" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> -<text x="290" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">GC distribution over all sequences</text> +<text x="300" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">GC distribution over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> <text x="10" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <rect width="10" height="520" x="20" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="30" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -289,8 +289,8 @@ <line x1="700" y1="560" x2="700" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="700" y1="560" x2="710" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="720" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> -<rect width="160" height="43" x="630" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="160" height="43" x="630" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="630" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">GC count per read</text> -<text x="630" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Theoretical Distribution</text> +<rect width="150" height="43" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="43" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">GC count per read</text> +<text x="640" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Theoretical Distribution</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_quality.png	✓	✓	✓ Diff within limits (0.8% pixels differ)
Total: 480000 px \| Differ: 3824 (0.80%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_quality.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/per_sequence_quality.svg +++ rust/Images/per_sequence_quality.svg @@ -5,14 +5,14 @@ <rect width="800" height="600" x="0" y="0" style="fill:rgb(255,255,255);stroke:none"/> <text x="0" y="566" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> -<text x="260" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> +<text x="270" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="280" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> +<text x="300" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> <text x="400" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">9</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="10" y1="40" x2="790" y2="40" stroke="rgb(180,180,180)" stroke-width="[SW]"/> -<rect width="170" height="23" x="620" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="170" height="23" x="620" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="620" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> +<rect width="150" height="23" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="23" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/sequence_length_distribution.png	✓	✓	✓ Diff within limits (1.5% pixels differ)
Total: 480000 px \| Differ: 7035 (1.47%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/sequence_length_distribution.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/sequence_length_distribution.svg +++ rust/Images/sequence_length_distribution.svg @@ -5,10 +5,10 @@ <rect width="800" height="600" x="0" y="0" style="fill:rgb(255,255,255);stroke:none"/> <text x="0" y="566" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> -<text x="240" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Distribution of sequence lengths over all sequences</text> +<text x="250" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Distribution of sequence lengths over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Length (bp)</text> +<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Length (bp)</text> <text x="130" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">15</text> <rect width="260" height="520" x="270" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="390" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">16</text> @@ -17,7 +17,7 @@ <line x1="10" y1="40" x2="790" y2="40" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="140" y1="560" x2="400" y2="40" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="400" y1="40" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="120" height="23" x="670" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="120" height="23" x="670" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="670" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> +<rect width="100" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="100" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="690" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust

minimal_min_length_10 PASS

Input: minimal.fastq | Args: --min_length 10

File	Java	Rust	Status
fastqc.fo	✓	✓	✓ Identical
fastqc_data.txt	✓	✓	✓ Identical
fastqc_report.html	✓	✓	✓ Expected diff
base64-encoded PNG images replaced with placeholders
summary.txt	✓	✓	✓ Identical
Icons/error.png	✓	✓	✓ Identical
Icons/fastqc_icon.png	✓	✓	✓ Identical
Icons/tick.png	✓	✓	✓ Identical
Icons/warning.png	✓	✓	✓ Identical
Images/adapter_content.png	✓	✓	✓ Diff within limits (2.7% pixels differ)
Total: 480000 px \| Differ: 12865 (2.68%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/adapter_content.svg	✓	✓	✓ Expected diff (18 lines patched)
Identical after applying patch: --- java/Images/adapter_content.svg +++ rust/Images/adapter_content.svg @@ -17,7 +17,7 @@ <text x="380" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">% Adapter</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="60" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="80" height="520" x="100" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="140" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -98,12 +98,12 @@ <line x1="520" y1="560" x2="600" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> <line x1="600" y1="560" x2="680" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> <line x1="680" y1="560" x2="750" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> -<rect width="220" height="123" x="570" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="220" height="123" x="570" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="580" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Illumina Universal Adapter</text> -<text x="580" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Illumina Small RNA 3' Adapter</text> -<text x="580" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">Illumina Small RNA 5' Adapter</text> -<text x="580" y="115" fill="rgb(221,204,119)" font-family="[FONT]" font-size="12">Nextera Transposase Sequence</text> -<text x="580" y="135" fill="rgb(68,170,153)" font-family="[FONT]" font-size="12">PolyA</text> -<text x="580" y="155" fill="rgb(170,68,153)" font-family="[FONT]" font-size="12">PolyG</text> +<rect width="200" height="123" x="590" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="200" height="123" x="590" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="600" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Illumina Universal Adapter</text> +<text x="600" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Illumina Small RNA 3' Adapter</text> +<text x="600" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">Illumina Small RNA 5' Adapter</text> +<text x="600" y="115" fill="rgb(221,204,119)" font-family="[FONT]" font-size="12">Nextera Transposase Sequence</text> +<text x="600" y="135" fill="rgb(68,170,153)" font-family="[FONT]" font-size="12">PolyA</text> +<text x="600" y="155" fill="rgb(170,68,153)" font-family="[FONT]" font-size="12">PolyG</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/duplication_levels.png	✓	✓	✓ Diff within limits (1.8% pixels differ)
Total: 480000 px \| Differ: 8534 (1.78%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/duplication_levels.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/duplication_levels.svg +++ rust/Images/duplication_levels.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="260" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Percent of seqs remaining if deduplicated 100%</text> +<text x="270" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Percent of seqs remaining if deduplicated 100%</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="310" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> +<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -68,7 +68,7 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="130" height="23" x="660" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="130" height="23" x="660" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="660" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> +<rect width="110" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="110" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="680" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_n_content.png	✓	✓	✓ Diff within limits (1.0% pixels differ)
Total: 480000 px \| Differ: 4893 (1.02%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_n_content.svg	✓	✓	✓ Expected diff (8 lines patched)
Identical after applying patch: --- java/Images/per_base_n_content.svg +++ rust/Images/per_base_n_content.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="320" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">N content across all bases</text> +<text x="330" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">N content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -68,7 +68,7 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="30" height="23" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="30" height="23" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="23" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="23" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%N</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_quality.png	✓	✓	✓ Diff within limits (1.2% pixels differ)
Total: 480000 px \| Differ: 5740 (1.20%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_quality.svg	✓	✓	✓ Expected diff (2 lines patched)
Identical after applying patch: --- java/Images/per_base_quality.svg +++ rust/Images/per_base_quality.svg @@ -88,7 +88,7 @@ <text x="760" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">16</text> <line x1="20" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="20" y1="560" x2="20" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <rect width="40" height="0" x="20" y="560" style="fill:rgb(240,240,0);stroke:none"/> <rect width="40" height="0" x="20" y="560" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(0,0,0)"/> <line x1="40" y1="560" x2="40" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_sequence_content.png	✓	✓	✓ Diff within limits (1.5% pixels differ)
Total: 480000 px \| Differ: 7272 (1.52%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_sequence_content.svg	✓	✓	✓ Expected diff (8 lines patched)
Identical after applying patch: --- java/Images/per_base_sequence_content.svg +++ rust/Images/per_base_sequence_content.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="300" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence content across all bases</text> +<text x="310" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -113,8 +113,8 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> -<rect width="30" height="83" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="30" height="83" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="83" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="83" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%T</text> <text x="770" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">%C</text> <text x="770" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">%A</text> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_gc_content.png	✓	✓	✓ Diff within limits (1.9% pixels differ)
Total: 480000 px \| Differ: 9323 (1.94%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_gc_content.svg	✓	✓	✓ Expected diff (12 lines patched)
Identical after applying patch: --- java/Images/per_sequence_gc_content.svg +++ rust/Images/per_sequence_gc_content.svg @@ -5,10 +5,10 @@ <rect width="800" height="600" x="0" y="0" style="fill:rgb(255,255,255);stroke:none"/> <text x="0" y="566" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> -<text x="290" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">GC distribution over all sequences</text> +<text x="300" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">GC distribution over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> <text x="10" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <rect width="10" height="520" x="20" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="30" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -289,8 +289,8 @@ <line x1="700" y1="560" x2="700" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="700" y1="560" x2="710" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="720" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> -<rect width="160" height="43" x="630" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="160" height="43" x="630" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="630" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">GC count per read</text> -<text x="630" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Theoretical Distribution</text> +<rect width="150" height="43" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="43" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">GC count per read</text> +<text x="640" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Theoretical Distribution</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_quality.png	✓	✓	✓ Diff within limits (0.8% pixels differ)
Total: 480000 px \| Differ: 3824 (0.80%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_quality.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/per_sequence_quality.svg +++ rust/Images/per_sequence_quality.svg @@ -5,14 +5,14 @@ <rect width="800" height="600" x="0" y="0" style="fill:rgb(255,255,255);stroke:none"/> <text x="0" y="566" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> -<text x="260" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> +<text x="270" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="280" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> +<text x="300" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> <text x="400" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">9</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="10" y1="40" x2="790" y2="40" stroke="rgb(180,180,180)" stroke-width="[SW]"/> -<rect width="170" height="23" x="620" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="170" height="23" x="620" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="620" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> +<rect width="150" height="23" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="23" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/sequence_length_distribution.png	✓	✓	✓ Diff within limits (1.5% pixels differ)
Total: 480000 px \| Differ: 7035 (1.47%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/sequence_length_distribution.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/sequence_length_distribution.svg +++ rust/Images/sequence_length_distribution.svg @@ -5,10 +5,10 @@ <rect width="800" height="600" x="0" y="0" style="fill:rgb(255,255,255);stroke:none"/> <text x="0" y="566" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> -<text x="240" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Distribution of sequence lengths over all sequences</text> +<text x="250" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Distribution of sequence lengths over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Length (bp)</text> +<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Length (bp)</text> <text x="130" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">15</text> <rect width="260" height="520" x="270" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="390" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">16</text> @@ -17,7 +17,7 @@ <line x1="10" y1="40" x2="790" y2="40" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="140" y1="560" x2="400" y2="40" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="400" y1="40" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="120" height="23" x="670" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="120" height="23" x="670" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="670" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> +<rect width="100" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="100" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="690" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust

minimal_dup_length_10 PASS

Input: minimal.fastq | Args: --dup_length 10

File	Java	Rust	Status
fastqc.fo	✓	✓	✓ Identical
fastqc_data.txt	✓	✓	✓ Identical
fastqc_report.html	✓	✓	✓ Expected diff
base64-encoded PNG images replaced with placeholders
summary.txt	✓	✓	✓ Identical
Icons/error.png	✓	✓	✓ Identical
Icons/fastqc_icon.png	✓	✓	✓ Identical
Icons/tick.png	✓	✓	✓ Identical
Icons/warning.png	✓	✓	✓ Identical
Images/adapter_content.png	✓	✓	✓ Diff within limits (2.4% pixels differ)
Total: 480000 px \| Differ: 11538 (2.40%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/adapter_content.svg	✓	✓	✓ Expected diff (18 lines patched)
Identical after applying patch: --- java/Images/adapter_content.svg +++ rust/Images/adapter_content.svg @@ -17,7 +17,7 @@ <text x="380" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">% Adapter</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="150" height="520" x="180" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="250" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -60,12 +60,12 @@ <line x1="260" y1="560" x2="410" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> <line x1="410" y1="560" x2="560" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> <line x1="560" y1="560" x2="710" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> -<rect width="220" height="123" x="570" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="220" height="123" x="570" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="580" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Illumina Universal Adapter</text> -<text x="580" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Illumina Small RNA 3' Adapter</text> -<text x="580" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">Illumina Small RNA 5' Adapter</text> -<text x="580" y="115" fill="rgb(221,204,119)" font-family="[FONT]" font-size="12">Nextera Transposase Sequence</text> -<text x="580" y="135" fill="rgb(68,170,153)" font-family="[FONT]" font-size="12">PolyA</text> -<text x="580" y="155" fill="rgb(170,68,153)" font-family="[FONT]" font-size="12">PolyG</text> +<rect width="200" height="123" x="590" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="200" height="123" x="590" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="600" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Illumina Universal Adapter</text> +<text x="600" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Illumina Small RNA 3' Adapter</text> +<text x="600" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">Illumina Small RNA 5' Adapter</text> +<text x="600" y="115" fill="rgb(221,204,119)" font-family="[FONT]" font-size="12">Nextera Transposase Sequence</text> +<text x="600" y="135" fill="rgb(68,170,153)" font-family="[FONT]" font-size="12">PolyA</text> +<text x="600" y="155" fill="rgb(170,68,153)" font-family="[FONT]" font-size="12">PolyG</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/duplication_levels.png	✓	✓	✓ Diff within limits (1.8% pixels differ)
Total: 480000 px \| Differ: 8534 (1.78%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/duplication_levels.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/duplication_levels.svg +++ rust/Images/duplication_levels.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="260" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Percent of seqs remaining if deduplicated 100%</text> +<text x="270" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Percent of seqs remaining if deduplicated 100%</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="310" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> +<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -68,7 +68,7 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="130" height="23" x="660" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="130" height="23" x="660" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="660" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> +<rect width="110" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="110" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="680" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_n_content.png	✓	✓	✓ Diff within limits (1.0% pixels differ)
Total: 480000 px \| Differ: 4893 (1.02%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_n_content.svg	✓	✓	✓ Expected diff (8 lines patched)
Identical after applying patch: --- java/Images/per_base_n_content.svg +++ rust/Images/per_base_n_content.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="320" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">N content across all bases</text> +<text x="330" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">N content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -68,7 +68,7 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="30" height="23" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="30" height="23" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="23" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="23" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%N</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_quality.png	✓	✓	✓ Diff within limits (1.2% pixels differ)
Total: 480000 px \| Differ: 5740 (1.20%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_quality.svg	✓	✓	✓ Expected diff (2 lines patched)
Identical after applying patch: --- java/Images/per_base_quality.svg +++ rust/Images/per_base_quality.svg @@ -88,7 +88,7 @@ <text x="760" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">16</text> <line x1="20" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="20" y1="560" x2="20" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <rect width="40" height="0" x="20" y="560" style="fill:rgb(240,240,0);stroke:none"/> <rect width="40" height="0" x="20" y="560" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(0,0,0)"/> <line x1="40" y1="560" x2="40" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_sequence_content.png	✓	✓	✓ Diff within limits (1.5% pixels differ)
Total: 480000 px \| Differ: 7272 (1.52%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_sequence_content.svg	✓	✓	✓ Expected diff (8 lines patched)
Identical after applying patch: --- java/Images/per_base_sequence_content.svg +++ rust/Images/per_base_sequence_content.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="300" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence content across all bases</text> +<text x="310" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -113,8 +113,8 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> -<rect width="30" height="83" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="30" height="83" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="83" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="83" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%T</text> <text x="770" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">%C</text> <text x="770" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">%A</text> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_gc_content.png	✓	✓	✓ Diff within limits (1.9% pixels differ)
Total: 480000 px \| Differ: 9323 (1.94%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_gc_content.svg	✓	✓	✓ Expected diff (12 lines patched)
Identical after applying patch: --- java/Images/per_sequence_gc_content.svg +++ rust/Images/per_sequence_gc_content.svg @@ -5,10 +5,10 @@ <rect width="800" height="600" x="0" y="0" style="fill:rgb(255,255,255);stroke:none"/> <text x="0" y="566" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> -<text x="290" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">GC distribution over all sequences</text> +<text x="300" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">GC distribution over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> <text x="10" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <rect width="10" height="520" x="20" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="30" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -289,8 +289,8 @@ <line x1="700" y1="560" x2="700" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="700" y1="560" x2="710" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="720" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> -<rect width="160" height="43" x="630" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="160" height="43" x="630" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="630" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">GC count per read</text> -<text x="630" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Theoretical Distribution</text> +<rect width="150" height="43" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="43" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">GC count per read</text> +<text x="640" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Theoretical Distribution</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_quality.png	✓	✓	✓ Diff within limits (0.8% pixels differ)
Total: 480000 px \| Differ: 3824 (0.80%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_quality.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/per_sequence_quality.svg +++ rust/Images/per_sequence_quality.svg @@ -5,14 +5,14 @@ <rect width="800" height="600" x="0" y="0" style="fill:rgb(255,255,255);stroke:none"/> <text x="0" y="566" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> -<text x="260" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> +<text x="270" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="280" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> +<text x="300" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> <text x="400" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">9</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="10" y1="40" x2="790" y2="40" stroke="rgb(180,180,180)" stroke-width="[SW]"/> -<rect width="170" height="23" x="620" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="170" height="23" x="620" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="620" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> +<rect width="150" height="23" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="23" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/sequence_length_distribution.png	✓	✓	✓ Diff within limits (1.5% pixels differ)
Total: 480000 px \| Differ: 7035 (1.47%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/sequence_length_distribution.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/sequence_length_distribution.svg +++ rust/Images/sequence_length_distribution.svg @@ -5,10 +5,10 @@ <rect width="800" height="600" x="0" y="0" style="fill:rgb(255,255,255);stroke:none"/> <text x="0" y="566" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> -<text x="240" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Distribution of sequence lengths over all sequences</text> +<text x="250" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Distribution of sequence lengths over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Length (bp)</text> +<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Length (bp)</text> <text x="130" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">15</text> <rect width="260" height="520" x="270" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="390" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">16</text> @@ -17,7 +17,7 @@ <line x1="10" y1="40" x2="790" y2="40" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="140" y1="560" x2="400" y2="40" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="400" y1="40" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="120" height="23" x="670" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="120" height="23" x="670" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="670" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> +<rect width="100" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="100" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="690" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust

complex_default PASS

Input: complex.fastq | Args: (default)

File	Java	Rust	Status
fastqc.fo	✓	✓	✓ Identical
fastqc_data.txt	✓	✓	✓ Identical
fastqc_report.html	✓	✓	✓ Expected diff
base64-encoded PNG images replaced with placeholders
summary.txt	✓	✓	✓ Identical
Icons/error.png	✓	✓	✓ Identical
Icons/fastqc_icon.png	✓	✓	✓ Identical
Icons/tick.png	✓	✓	✓ Identical
Icons/warning.png	✓	✓	✓ Identical
Images/adapter_content.png	✓	✓	✓ Diff within limits (2.2% pixels differ)
Total: 480000 px \| Differ: 10457 (2.18%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/adapter_content.svg	✓	✓	✓ Expected diff (18 lines patched)
Identical after applying patch: --- java/Images/adapter_content.svg +++ rust/Images/adapter_content.svg @@ -17,7 +17,7 @@ <text x="380" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">% Adapter</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="150" height="520" x="180" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="250" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -60,12 +60,12 @@ <line x1="260" y1="560" x2="410" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> <line x1="410" y1="560" x2="560" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> <line x1="560" y1="560" x2="710" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> -<rect width="220" height="123" x="570" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="220" height="123" x="570" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="580" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Illumina Universal Adapter</text> -<text x="580" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Illumina Small RNA 3' Adapter</text> -<text x="580" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">Illumina Small RNA 5' Adapter</text> -<text x="580" y="115" fill="rgb(221,204,119)" font-family="[FONT]" font-size="12">Nextera Transposase Sequence</text> -<text x="580" y="135" fill="rgb(68,170,153)" font-family="[FONT]" font-size="12">PolyA</text> -<text x="580" y="155" fill="rgb(170,68,153)" font-family="[FONT]" font-size="12">PolyG</text> +<rect width="200" height="123" x="590" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="200" height="123" x="590" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="600" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Illumina Universal Adapter</text> +<text x="600" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Illumina Small RNA 3' Adapter</text> +<text x="600" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">Illumina Small RNA 5' Adapter</text> +<text x="600" y="115" fill="rgb(221,204,119)" font-family="[FONT]" font-size="12">Nextera Transposase Sequence</text> +<text x="600" y="135" fill="rgb(68,170,153)" font-family="[FONT]" font-size="12">PolyA</text> +<text x="600" y="155" fill="rgb(170,68,153)" font-family="[FONT]" font-size="12">PolyG</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/duplication_levels.png	✓	✓	✓ Diff within limits (2.1% pixels differ)
Total: 480000 px \| Differ: 9913 (2.07%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/duplication_levels.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/duplication_levels.svg +++ rust/Images/duplication_levels.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="260" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Percent of seqs remaining if deduplicated 20%</text> +<text x="270" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Percent of seqs remaining if deduplicated 20%</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="310" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> +<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -68,7 +68,7 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="130" height="23" x="660" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="130" height="23" x="660" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="660" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> +<rect width="110" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="110" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="680" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_n_content.png	✓	✓	✓ Diff within limits (1.0% pixels differ)
Total: 480000 px \| Differ: 4893 (1.02%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_n_content.svg	✓	✓	✓ Expected diff (8 lines patched)
Identical after applying patch: --- java/Images/per_base_n_content.svg +++ rust/Images/per_base_n_content.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="320" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">N content across all bases</text> +<text x="330" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">N content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -68,7 +68,7 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="30" height="23" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="30" height="23" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="23" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="23" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%N</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_quality.png	✓	✓	✓ Diff within limits (1.2% pixels differ)
Total: 480000 px \| Differ: 5740 (1.20%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_quality.svg	✓	✓	✓ Expected diff (2 lines patched)
Identical after applying patch: --- java/Images/per_base_quality.svg +++ rust/Images/per_base_quality.svg @@ -88,7 +88,7 @@ <text x="760" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">16</text> <line x1="20" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="20" y1="560" x2="20" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <rect width="40" height="0" x="20" y="560" style="fill:rgb(240,240,0);stroke:none"/> <rect width="40" height="0" x="20" y="560" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(0,0,0)"/> <line x1="40" y1="560" x2="40" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_sequence_content.png	✓	✓	✓ Diff within limits (10.0% pixels differ)
Total: 480000 px \| Differ: 48167 (10.03%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_sequence_content.svg	✓	✓	✓ Expected diff (8 lines patched)
Identical after applying patch: --- java/Images/per_base_sequence_content.svg +++ rust/Images/per_base_sequence_content.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="300" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence content across all bases</text> +<text x="310" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -113,8 +113,8 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="40" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="710" y1="40" x2="760" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> -<rect width="30" height="83" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="30" height="83" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="83" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="83" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%T</text> <text x="770" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">%C</text> <text x="770" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">%A</text> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_gc_content.png	✓	✓	✓ Diff within limits (2.5% pixels differ)
Total: 480000 px \| Differ: 11780 (2.45%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_gc_content.svg	✓	✓	✓ Expected diff (12 lines patched)
Identical after applying patch: --- java/Images/per_sequence_gc_content.svg +++ rust/Images/per_sequence_gc_content.svg @@ -10,10 +10,10 @@ <text x="0" y="252" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">4</text> <text x="0" y="173" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">5</text> <text x="0" y="95" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">6</text> -<text x="290" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">GC distribution over all sequences</text> +<text x="300" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">GC distribution over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> <text x="10" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <rect width="10" height="520" x="20" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="30" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -299,8 +299,8 @@ <line x1="700" y1="560" x2="700" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="700" y1="560" x2="710" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="720" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> -<rect width="160" height="43" x="630" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="160" height="43" x="630" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="630" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">GC count per read</text> -<text x="630" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Theoretical Distribution</text> +<rect width="150" height="43" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="43" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">GC count per read</text> +<text x="640" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Theoretical Distribution</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_quality.png	✓	✓	✓ Diff within limits (0.8% pixels differ)
Total: 480000 px \| Differ: 3977 (0.83%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_quality.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/per_sequence_quality.svg +++ rust/Images/per_sequence_quality.svg @@ -9,10 +9,10 @@ <text x="0" y="254" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">3</text> <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">4</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">5</text> -<text x="260" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> +<text x="270" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="280" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> +<text x="300" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> <text x="400" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">9</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="10" y1="456" x2="790" y2="456" stroke="rgb(180,180,180)" stroke-width="[SW]"/> @@ -20,7 +20,7 @@ <line x1="10" y1="248" x2="790" y2="248" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="10" y1="144" x2="790" y2="144" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="10" y1="40" x2="790" y2="40" stroke="rgb(180,180,180)" stroke-width="[SW]"/> -<rect width="170" height="23" x="620" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="170" height="23" x="620" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="620" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> +<rect width="150" height="23" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="23" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/sequence_length_distribution.png	✓	✓	✓ Diff within limits (1.5% pixels differ)
Total: 480000 px \| Differ: 7188 (1.50%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/sequence_length_distribution.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/sequence_length_distribution.svg +++ rust/Images/sequence_length_distribution.svg @@ -9,10 +9,10 @@ <text x="0" y="254" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">3</text> <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">4</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">5</text> -<text x="240" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Distribution of sequence lengths over all sequences</text> +<text x="250" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Distribution of sequence lengths over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Length (bp)</text> +<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Length (bp)</text> <text x="130" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">15</text> <rect width="260" height="520" x="270" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="390" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">16</text> @@ -25,7 +25,7 @@ <line x1="10" y1="40" x2="790" y2="40" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="140" y1="560" x2="400" y2="40" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="400" y1="40" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="120" height="23" x="670" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="120" height="23" x="670" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="670" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> +<rect width="100" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="100" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="690" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust

complex_nogroup PASS

Input: complex.fastq | Args: --nogroup

File	Java	Rust	Status
fastqc.fo	✓	✓	✓ Identical
fastqc_data.txt	✓	✓	✓ Identical
fastqc_report.html	✓	✓	✓ Expected diff
base64-encoded PNG images replaced with placeholders
summary.txt	✓	✓	✓ Identical
Icons/error.png	✓	✓	✓ Identical
Icons/fastqc_icon.png	✓	✓	✓ Identical
Icons/tick.png	✓	✓	✓ Identical
Icons/warning.png	✓	✓	✓ Identical
Images/adapter_content.png	✓	✓	✓ Diff within limits (2.2% pixels differ)
Total: 480000 px \| Differ: 10457 (2.18%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/adapter_content.svg	✓	✓	✓ Expected diff (18 lines patched)
Identical after applying patch: --- java/Images/adapter_content.svg +++ rust/Images/adapter_content.svg @@ -17,7 +17,7 @@ <text x="380" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">% Adapter</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="150" height="520" x="180" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="250" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -60,12 +60,12 @@ <line x1="260" y1="560" x2="410" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> <line x1="410" y1="560" x2="560" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> <line x1="560" y1="560" x2="710" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> -<rect width="220" height="123" x="570" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="220" height="123" x="570" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="580" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Illumina Universal Adapter</text> -<text x="580" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Illumina Small RNA 3' Adapter</text> -<text x="580" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">Illumina Small RNA 5' Adapter</text> -<text x="580" y="115" fill="rgb(221,204,119)" font-family="[FONT]" font-size="12">Nextera Transposase Sequence</text> -<text x="580" y="135" fill="rgb(68,170,153)" font-family="[FONT]" font-size="12">PolyA</text> -<text x="580" y="155" fill="rgb(170,68,153)" font-family="[FONT]" font-size="12">PolyG</text> +<rect width="200" height="123" x="590" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="200" height="123" x="590" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="600" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Illumina Universal Adapter</text> +<text x="600" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Illumina Small RNA 3' Adapter</text> +<text x="600" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">Illumina Small RNA 5' Adapter</text> +<text x="600" y="115" fill="rgb(221,204,119)" font-family="[FONT]" font-size="12">Nextera Transposase Sequence</text> +<text x="600" y="135" fill="rgb(68,170,153)" font-family="[FONT]" font-size="12">PolyA</text> +<text x="600" y="155" fill="rgb(170,68,153)" font-family="[FONT]" font-size="12">PolyG</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/duplication_levels.png	✓	✓	✓ Diff within limits (2.1% pixels differ)
Total: 480000 px \| Differ: 9913 (2.07%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/duplication_levels.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/duplication_levels.svg +++ rust/Images/duplication_levels.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="260" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Percent of seqs remaining if deduplicated 20%</text> +<text x="270" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Percent of seqs remaining if deduplicated 20%</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="310" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> +<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -68,7 +68,7 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="130" height="23" x="660" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="130" height="23" x="660" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="660" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> +<rect width="110" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="110" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="680" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_n_content.png	✓	✓	✓ Diff within limits (1.0% pixels differ)
Total: 480000 px \| Differ: 4893 (1.02%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_n_content.svg	✓	✓	✓ Expected diff (8 lines patched)
Identical after applying patch: --- java/Images/per_base_n_content.svg +++ rust/Images/per_base_n_content.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="320" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">N content across all bases</text> +<text x="330" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">N content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -68,7 +68,7 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="30" height="23" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="30" height="23" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="23" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="23" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%N</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_quality.png	✓	✓	✓ Diff within limits (1.2% pixels differ)
Total: 480000 px \| Differ: 5740 (1.20%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_quality.svg	✓	✓	✓ Expected diff (2 lines patched)
Identical after applying patch: --- java/Images/per_base_quality.svg +++ rust/Images/per_base_quality.svg @@ -88,7 +88,7 @@ <text x="760" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">16</text> <line x1="20" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="20" y1="560" x2="20" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <rect width="40" height="0" x="20" y="560" style="fill:rgb(240,240,0);stroke:none"/> <rect width="40" height="0" x="20" y="560" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(0,0,0)"/> <line x1="40" y1="560" x2="40" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_sequence_content.png	✓	✓	✓ Diff within limits (10.0% pixels differ)
Total: 480000 px \| Differ: 48167 (10.03%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_sequence_content.svg	✓	✓	✓ Expected diff (8 lines patched)
Identical after applying patch: --- java/Images/per_base_sequence_content.svg +++ rust/Images/per_base_sequence_content.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="300" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence content across all bases</text> +<text x="310" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -113,8 +113,8 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="40" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="710" y1="40" x2="760" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> -<rect width="30" height="83" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="30" height="83" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="83" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="83" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%T</text> <text x="770" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">%C</text> <text x="770" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">%A</text> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_gc_content.png	✓	✓	✓ Diff within limits (2.5% pixels differ)
Total: 480000 px \| Differ: 11780 (2.45%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_gc_content.svg	✓	✓	✓ Expected diff (12 lines patched)
Identical after applying patch: --- java/Images/per_sequence_gc_content.svg +++ rust/Images/per_sequence_gc_content.svg @@ -10,10 +10,10 @@ <text x="0" y="252" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">4</text> <text x="0" y="173" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">5</text> <text x="0" y="95" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">6</text> -<text x="290" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">GC distribution over all sequences</text> +<text x="300" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">GC distribution over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> <text x="10" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <rect width="10" height="520" x="20" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="30" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -299,8 +299,8 @@ <line x1="700" y1="560" x2="700" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="700" y1="560" x2="710" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="720" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> -<rect width="160" height="43" x="630" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="160" height="43" x="630" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="630" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">GC count per read</text> -<text x="630" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Theoretical Distribution</text> +<rect width="150" height="43" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="43" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">GC count per read</text> +<text x="640" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Theoretical Distribution</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_quality.png	✓	✓	✓ Diff within limits (0.8% pixels differ)
Total: 480000 px \| Differ: 3977 (0.83%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_quality.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/per_sequence_quality.svg +++ rust/Images/per_sequence_quality.svg @@ -9,10 +9,10 @@ <text x="0" y="254" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">3</text> <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">4</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">5</text> -<text x="260" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> +<text x="270" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="280" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> +<text x="300" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> <text x="400" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">9</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="10" y1="456" x2="790" y2="456" stroke="rgb(180,180,180)" stroke-width="[SW]"/> @@ -20,7 +20,7 @@ <line x1="10" y1="248" x2="790" y2="248" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="10" y1="144" x2="790" y2="144" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="10" y1="40" x2="790" y2="40" stroke="rgb(180,180,180)" stroke-width="[SW]"/> -<rect width="170" height="23" x="620" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="170" height="23" x="620" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="620" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> +<rect width="150" height="23" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="23" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/sequence_length_distribution.png	✓	✓	✓ Diff within limits (1.5% pixels differ)
Total: 480000 px \| Differ: 7188 (1.50%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/sequence_length_distribution.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/sequence_length_distribution.svg +++ rust/Images/sequence_length_distribution.svg @@ -9,10 +9,10 @@ <text x="0" y="254" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">3</text> <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">4</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">5</text> -<text x="240" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Distribution of sequence lengths over all sequences</text> +<text x="250" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Distribution of sequence lengths over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Length (bp)</text> +<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Length (bp)</text> <text x="130" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">15</text> <rect width="260" height="520" x="270" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="390" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">16</text> @@ -25,7 +25,7 @@ <line x1="10" y1="40" x2="790" y2="40" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="140" y1="560" x2="400" y2="40" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="400" y1="40" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="120" height="23" x="670" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="120" height="23" x="670" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="670" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> +<rect width="100" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="100" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="690" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust

complex_expgroup PASS

Input: complex.fastq | Args: --expgroup

File	Java	Rust	Status
fastqc.fo	✓	✓	✓ Identical
fastqc_data.txt	✓	✓	✓ Identical
fastqc_report.html	✓	✓	✓ Expected diff
base64-encoded PNG images replaced with placeholders
summary.txt	✓	✓	✓ Identical
Icons/error.png	✓	✓	✓ Identical
Icons/fastqc_icon.png	✓	✓	✓ Identical
Icons/tick.png	✓	✓	✓ Identical
Icons/warning.png	✓	✓	✓ Identical
Images/adapter_content.png	✓	✓	✓ Diff within limits (2.2% pixels differ)
Total: 480000 px \| Differ: 10457 (2.18%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/adapter_content.svg	✓	✓	✓ Expected diff (18 lines patched)
Identical after applying patch: --- java/Images/adapter_content.svg +++ rust/Images/adapter_content.svg @@ -17,7 +17,7 @@ <text x="380" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">% Adapter</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="150" height="520" x="180" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="250" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -60,12 +60,12 @@ <line x1="260" y1="560" x2="410" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> <line x1="410" y1="560" x2="560" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> <line x1="560" y1="560" x2="710" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> -<rect width="220" height="123" x="570" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="220" height="123" x="570" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="580" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Illumina Universal Adapter</text> -<text x="580" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Illumina Small RNA 3' Adapter</text> -<text x="580" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">Illumina Small RNA 5' Adapter</text> -<text x="580" y="115" fill="rgb(221,204,119)" font-family="[FONT]" font-size="12">Nextera Transposase Sequence</text> -<text x="580" y="135" fill="rgb(68,170,153)" font-family="[FONT]" font-size="12">PolyA</text> -<text x="580" y="155" fill="rgb(170,68,153)" font-family="[FONT]" font-size="12">PolyG</text> +<rect width="200" height="123" x="590" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="200" height="123" x="590" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="600" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Illumina Universal Adapter</text> +<text x="600" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Illumina Small RNA 3' Adapter</text> +<text x="600" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">Illumina Small RNA 5' Adapter</text> +<text x="600" y="115" fill="rgb(221,204,119)" font-family="[FONT]" font-size="12">Nextera Transposase Sequence</text> +<text x="600" y="135" fill="rgb(68,170,153)" font-family="[FONT]" font-size="12">PolyA</text> +<text x="600" y="155" fill="rgb(170,68,153)" font-family="[FONT]" font-size="12">PolyG</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/duplication_levels.png	✓	✓	✓ Diff within limits (2.1% pixels differ)
Total: 480000 px \| Differ: 9913 (2.07%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/duplication_levels.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/duplication_levels.svg +++ rust/Images/duplication_levels.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="260" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Percent of seqs remaining if deduplicated 20%</text> +<text x="270" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Percent of seqs remaining if deduplicated 20%</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="310" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> +<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -68,7 +68,7 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="130" height="23" x="660" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="130" height="23" x="660" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="660" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> +<rect width="110" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="110" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="680" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_n_content.png	✓	✓	✓ Diff within limits (1.0% pixels differ)
Total: 480000 px \| Differ: 4893 (1.02%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_n_content.svg	✓	✓	✓ Expected diff (8 lines patched)
Identical after applying patch: --- java/Images/per_base_n_content.svg +++ rust/Images/per_base_n_content.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="320" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">N content across all bases</text> +<text x="330" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">N content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -68,7 +68,7 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="30" height="23" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="30" height="23" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="23" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="23" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%N</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_quality.png	✓	✓	✓ Diff within limits (1.2% pixels differ)
Total: 480000 px \| Differ: 5740 (1.20%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_quality.svg	✓	✓	✓ Expected diff (2 lines patched)
Identical after applying patch: --- java/Images/per_base_quality.svg +++ rust/Images/per_base_quality.svg @@ -88,7 +88,7 @@ <text x="760" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">16</text> <line x1="20" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="20" y1="560" x2="20" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <rect width="40" height="0" x="20" y="560" style="fill:rgb(240,240,0);stroke:none"/> <rect width="40" height="0" x="20" y="560" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(0,0,0)"/> <line x1="40" y1="560" x2="40" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_sequence_content.png	✓	✓	✓ Diff within limits (10.0% pixels differ)
Total: 480000 px \| Differ: 48167 (10.03%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_sequence_content.svg	✓	✓	✓ Expected diff (8 lines patched)
Identical after applying patch: --- java/Images/per_base_sequence_content.svg +++ rust/Images/per_base_sequence_content.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="300" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence content across all bases</text> +<text x="310" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -113,8 +113,8 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="40" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="710" y1="40" x2="760" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> -<rect width="30" height="83" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="30" height="83" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="83" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="83" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%T</text> <text x="770" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">%C</text> <text x="770" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">%A</text> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_gc_content.png	✓	✓	✓ Diff within limits (2.5% pixels differ)
Total: 480000 px \| Differ: 11780 (2.45%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_gc_content.svg	✓	✓	✓ Expected diff (12 lines patched)
Identical after applying patch: --- java/Images/per_sequence_gc_content.svg +++ rust/Images/per_sequence_gc_content.svg @@ -10,10 +10,10 @@ <text x="0" y="252" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">4</text> <text x="0" y="173" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">5</text> <text x="0" y="95" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">6</text> -<text x="290" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">GC distribution over all sequences</text> +<text x="300" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">GC distribution over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> <text x="10" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <rect width="10" height="520" x="20" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="30" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -299,8 +299,8 @@ <line x1="700" y1="560" x2="700" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="700" y1="560" x2="710" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="720" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> -<rect width="160" height="43" x="630" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="160" height="43" x="630" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="630" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">GC count per read</text> -<text x="630" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Theoretical Distribution</text> +<rect width="150" height="43" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="43" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">GC count per read</text> +<text x="640" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Theoretical Distribution</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_quality.png	✓	✓	✓ Diff within limits (0.8% pixels differ)
Total: 480000 px \| Differ: 3977 (0.83%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_quality.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/per_sequence_quality.svg +++ rust/Images/per_sequence_quality.svg @@ -9,10 +9,10 @@ <text x="0" y="254" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">3</text> <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">4</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">5</text> -<text x="260" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> +<text x="270" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="280" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> +<text x="300" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> <text x="400" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">9</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="10" y1="456" x2="790" y2="456" stroke="rgb(180,180,180)" stroke-width="[SW]"/> @@ -20,7 +20,7 @@ <line x1="10" y1="248" x2="790" y2="248" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="10" y1="144" x2="790" y2="144" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="10" y1="40" x2="790" y2="40" stroke="rgb(180,180,180)" stroke-width="[SW]"/> -<rect width="170" height="23" x="620" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="170" height="23" x="620" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="620" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> +<rect width="150" height="23" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="23" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/sequence_length_distribution.png	✓	✓	✓ Diff within limits (1.5% pixels differ)
Total: 480000 px \| Differ: 7188 (1.50%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/sequence_length_distribution.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/sequence_length_distribution.svg +++ rust/Images/sequence_length_distribution.svg @@ -9,10 +9,10 @@ <text x="0" y="254" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">3</text> <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">4</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">5</text> -<text x="240" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Distribution of sequence lengths over all sequences</text> +<text x="250" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Distribution of sequence lengths over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Length (bp)</text> +<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Length (bp)</text> <text x="130" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">15</text> <rect width="260" height="520" x="270" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="390" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">16</text> @@ -25,7 +25,7 @@ <line x1="10" y1="40" x2="790" y2="40" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="140" y1="560" x2="400" y2="40" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="400" y1="40" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="120" height="23" x="670" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="120" height="23" x="670" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="670" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> +<rect width="100" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="100" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="690" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust

complex_casava PASS

Input: complex.fastq | Args: --casava

File	Java	Rust	Status
fastqc.fo	✓	✓	✓ Identical
fastqc_data.txt	✓	✓	✓ Identical
fastqc_report.html	✓	✓	✓ Expected diff
base64-encoded PNG images replaced with placeholders
summary.txt	✓	✓	✓ Identical
Icons/error.png	✓	✓	✓ Identical
Icons/fastqc_icon.png	✓	✓	✓ Identical
Icons/tick.png	✓	✓	✓ Identical
Icons/warning.png	✓	✓	✓ Identical
Images/adapter_content.png	✓	✓	✓ Diff within limits (2.2% pixels differ)
Total: 480000 px \| Differ: 10457 (2.18%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/adapter_content.svg	✓	✓	✓ Expected diff (18 lines patched)
Identical after applying patch: --- java/Images/adapter_content.svg +++ rust/Images/adapter_content.svg @@ -17,7 +17,7 @@ <text x="380" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">% Adapter</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="150" height="520" x="180" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="250" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -60,12 +60,12 @@ <line x1="260" y1="560" x2="410" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> <line x1="410" y1="560" x2="560" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> <line x1="560" y1="560" x2="710" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> -<rect width="220" height="123" x="570" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="220" height="123" x="570" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="580" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Illumina Universal Adapter</text> -<text x="580" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Illumina Small RNA 3' Adapter</text> -<text x="580" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">Illumina Small RNA 5' Adapter</text> -<text x="580" y="115" fill="rgb(221,204,119)" font-family="[FONT]" font-size="12">Nextera Transposase Sequence</text> -<text x="580" y="135" fill="rgb(68,170,153)" font-family="[FONT]" font-size="12">PolyA</text> -<text x="580" y="155" fill="rgb(170,68,153)" font-family="[FONT]" font-size="12">PolyG</text> +<rect width="200" height="123" x="590" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="200" height="123" x="590" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="600" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Illumina Universal Adapter</text> +<text x="600" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Illumina Small RNA 3' Adapter</text> +<text x="600" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">Illumina Small RNA 5' Adapter</text> +<text x="600" y="115" fill="rgb(221,204,119)" font-family="[FONT]" font-size="12">Nextera Transposase Sequence</text> +<text x="600" y="135" fill="rgb(68,170,153)" font-family="[FONT]" font-size="12">PolyA</text> +<text x="600" y="155" fill="rgb(170,68,153)" font-family="[FONT]" font-size="12">PolyG</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/duplication_levels.png	✓	✓	✓ Diff within limits (2.1% pixels differ)
Total: 480000 px \| Differ: 9913 (2.07%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/duplication_levels.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/duplication_levels.svg +++ rust/Images/duplication_levels.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="260" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Percent of seqs remaining if deduplicated 20%</text> +<text x="270" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Percent of seqs remaining if deduplicated 20%</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="310" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> +<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -68,7 +68,7 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="130" height="23" x="660" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="130" height="23" x="660" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="660" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> +<rect width="110" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="110" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="680" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_n_content.png	✓	✓	✓ Diff within limits (1.0% pixels differ)
Total: 480000 px \| Differ: 4893 (1.02%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_n_content.svg	✓	✓	✓ Expected diff (8 lines patched)
Identical after applying patch: --- java/Images/per_base_n_content.svg +++ rust/Images/per_base_n_content.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="320" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">N content across all bases</text> +<text x="330" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">N content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -68,7 +68,7 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="30" height="23" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="30" height="23" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="23" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="23" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%N</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_quality.png	✓	✓	✓ Diff within limits (1.2% pixels differ)
Total: 480000 px \| Differ: 5740 (1.20%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_quality.svg	✓	✓	✓ Expected diff (2 lines patched)
Identical after applying patch: --- java/Images/per_base_quality.svg +++ rust/Images/per_base_quality.svg @@ -88,7 +88,7 @@ <text x="760" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">16</text> <line x1="20" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="20" y1="560" x2="20" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <rect width="40" height="0" x="20" y="560" style="fill:rgb(240,240,0);stroke:none"/> <rect width="40" height="0" x="20" y="560" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(0,0,0)"/> <line x1="40" y1="560" x2="40" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_sequence_content.png	✓	✓	✓ Diff within limits (10.0% pixels differ)
Total: 480000 px \| Differ: 48167 (10.03%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_sequence_content.svg	✓	✓	✓ Expected diff (8 lines patched)
Identical after applying patch: --- java/Images/per_base_sequence_content.svg +++ rust/Images/per_base_sequence_content.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="300" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence content across all bases</text> +<text x="310" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -113,8 +113,8 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="40" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="710" y1="40" x2="760" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> -<rect width="30" height="83" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="30" height="83" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="83" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="83" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%T</text> <text x="770" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">%C</text> <text x="770" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">%A</text> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_gc_content.png	✓	✓	✓ Diff within limits (2.5% pixels differ)
Total: 480000 px \| Differ: 11780 (2.45%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_gc_content.svg	✓	✓	✓ Expected diff (12 lines patched)
Identical after applying patch: --- java/Images/per_sequence_gc_content.svg +++ rust/Images/per_sequence_gc_content.svg @@ -10,10 +10,10 @@ <text x="0" y="252" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">4</text> <text x="0" y="173" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">5</text> <text x="0" y="95" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">6</text> -<text x="290" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">GC distribution over all sequences</text> +<text x="300" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">GC distribution over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> <text x="10" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <rect width="10" height="520" x="20" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="30" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -299,8 +299,8 @@ <line x1="700" y1="560" x2="700" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="700" y1="560" x2="710" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="720" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> -<rect width="160" height="43" x="630" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="160" height="43" x="630" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="630" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">GC count per read</text> -<text x="630" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Theoretical Distribution</text> +<rect width="150" height="43" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="43" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">GC count per read</text> +<text x="640" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Theoretical Distribution</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_quality.png	✓	✓	✓ Diff within limits (0.8% pixels differ)
Total: 480000 px \| Differ: 3977 (0.83%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_quality.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/per_sequence_quality.svg +++ rust/Images/per_sequence_quality.svg @@ -9,10 +9,10 @@ <text x="0" y="254" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">3</text> <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">4</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">5</text> -<text x="260" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> +<text x="270" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="280" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> +<text x="300" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> <text x="400" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">9</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="10" y1="456" x2="790" y2="456" stroke="rgb(180,180,180)" stroke-width="[SW]"/> @@ -20,7 +20,7 @@ <line x1="10" y1="248" x2="790" y2="248" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="10" y1="144" x2="790" y2="144" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="10" y1="40" x2="790" y2="40" stroke="rgb(180,180,180)" stroke-width="[SW]"/> -<rect width="170" height="23" x="620" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="170" height="23" x="620" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="620" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> +<rect width="150" height="23" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="23" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/sequence_length_distribution.png	✓	✓	✓ Diff within limits (1.5% pixels differ)
Total: 480000 px \| Differ: 7188 (1.50%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/sequence_length_distribution.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/sequence_length_distribution.svg +++ rust/Images/sequence_length_distribution.svg @@ -9,10 +9,10 @@ <text x="0" y="254" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">3</text> <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">4</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">5</text> -<text x="240" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Distribution of sequence lengths over all sequences</text> +<text x="250" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Distribution of sequence lengths over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Length (bp)</text> +<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Length (bp)</text> <text x="130" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">15</text> <rect width="260" height="520" x="270" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="390" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">16</text> @@ -25,7 +25,7 @@ <line x1="10" y1="40" x2="790" y2="40" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="140" y1="560" x2="400" y2="40" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="400" y1="40" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="120" height="23" x="670" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="120" height="23" x="670" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="670" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> +<rect width="100" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="100" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="690" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust

complex_casava_nofilter PASS

Input: complex.fastq | Args: --casava --nofilter

File	Java	Rust	Status
fastqc.fo	✓	✓	✓ Identical
fastqc_data.txt	✓	✓	✓ Identical
fastqc_report.html	✓	✓	✓ Expected diff
base64-encoded PNG images replaced with placeholders
summary.txt	✓	✓	✓ Identical
Icons/error.png	✓	✓	✓ Identical
Icons/fastqc_icon.png	✓	✓	✓ Identical
Icons/tick.png	✓	✓	✓ Identical
Icons/warning.png	✓	✓	✓ Identical
Images/adapter_content.png	✓	✓	✓ Diff within limits (2.2% pixels differ)
Total: 480000 px \| Differ: 10457 (2.18%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/adapter_content.svg	✓	✓	✓ Expected diff (18 lines patched)
Identical after applying patch: --- java/Images/adapter_content.svg +++ rust/Images/adapter_content.svg @@ -17,7 +17,7 @@ <text x="380" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">% Adapter</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="150" height="520" x="180" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="250" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -60,12 +60,12 @@ <line x1="260" y1="560" x2="410" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> <line x1="410" y1="560" x2="560" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> <line x1="560" y1="560" x2="710" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> -<rect width="220" height="123" x="570" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="220" height="123" x="570" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="580" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Illumina Universal Adapter</text> -<text x="580" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Illumina Small RNA 3' Adapter</text> -<text x="580" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">Illumina Small RNA 5' Adapter</text> -<text x="580" y="115" fill="rgb(221,204,119)" font-family="[FONT]" font-size="12">Nextera Transposase Sequence</text> -<text x="580" y="135" fill="rgb(68,170,153)" font-family="[FONT]" font-size="12">PolyA</text> -<text x="580" y="155" fill="rgb(170,68,153)" font-family="[FONT]" font-size="12">PolyG</text> +<rect width="200" height="123" x="590" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="200" height="123" x="590" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="600" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Illumina Universal Adapter</text> +<text x="600" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Illumina Small RNA 3' Adapter</text> +<text x="600" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">Illumina Small RNA 5' Adapter</text> +<text x="600" y="115" fill="rgb(221,204,119)" font-family="[FONT]" font-size="12">Nextera Transposase Sequence</text> +<text x="600" y="135" fill="rgb(68,170,153)" font-family="[FONT]" font-size="12">PolyA</text> +<text x="600" y="155" fill="rgb(170,68,153)" font-family="[FONT]" font-size="12">PolyG</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/duplication_levels.png	✓	✓	✓ Diff within limits (2.1% pixels differ)
Total: 480000 px \| Differ: 9913 (2.07%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/duplication_levels.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/duplication_levels.svg +++ rust/Images/duplication_levels.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="260" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Percent of seqs remaining if deduplicated 20%</text> +<text x="270" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Percent of seqs remaining if deduplicated 20%</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="310" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> +<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -68,7 +68,7 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="130" height="23" x="660" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="130" height="23" x="660" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="660" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> +<rect width="110" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="110" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="680" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_n_content.png	✓	✓	✓ Diff within limits (1.0% pixels differ)
Total: 480000 px \| Differ: 4893 (1.02%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_n_content.svg	✓	✓	✓ Expected diff (8 lines patched)
Identical after applying patch: --- java/Images/per_base_n_content.svg +++ rust/Images/per_base_n_content.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="320" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">N content across all bases</text> +<text x="330" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">N content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -68,7 +68,7 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="30" height="23" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="30" height="23" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="23" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="23" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%N</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_quality.png	✓	✓	✓ Diff within limits (1.2% pixels differ)
Total: 480000 px \| Differ: 5740 (1.20%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_quality.svg	✓	✓	✓ Expected diff (2 lines patched)
Identical after applying patch: --- java/Images/per_base_quality.svg +++ rust/Images/per_base_quality.svg @@ -88,7 +88,7 @@ <text x="760" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">16</text> <line x1="20" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="20" y1="560" x2="20" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <rect width="40" height="0" x="20" y="560" style="fill:rgb(240,240,0);stroke:none"/> <rect width="40" height="0" x="20" y="560" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(0,0,0)"/> <line x1="40" y1="560" x2="40" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_sequence_content.png	✓	✓	✓ Diff within limits (10.0% pixels differ)
Total: 480000 px \| Differ: 48167 (10.03%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_sequence_content.svg	✓	✓	✓ Expected diff (8 lines patched)
Identical after applying patch: --- java/Images/per_base_sequence_content.svg +++ rust/Images/per_base_sequence_content.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="300" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence content across all bases</text> +<text x="310" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -113,8 +113,8 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="40" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="710" y1="40" x2="760" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> -<rect width="30" height="83" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="30" height="83" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="83" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="83" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%T</text> <text x="770" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">%C</text> <text x="770" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">%A</text> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_gc_content.png	✓	✓	✓ Diff within limits (2.5% pixels differ)
Total: 480000 px \| Differ: 11780 (2.45%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_gc_content.svg	✓	✓	✓ Expected diff (12 lines patched)
Identical after applying patch: --- java/Images/per_sequence_gc_content.svg +++ rust/Images/per_sequence_gc_content.svg @@ -10,10 +10,10 @@ <text x="0" y="252" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">4</text> <text x="0" y="173" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">5</text> <text x="0" y="95" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">6</text> -<text x="290" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">GC distribution over all sequences</text> +<text x="300" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">GC distribution over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> <text x="10" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <rect width="10" height="520" x="20" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="30" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -299,8 +299,8 @@ <line x1="700" y1="560" x2="700" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="700" y1="560" x2="710" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="720" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> -<rect width="160" height="43" x="630" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="160" height="43" x="630" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="630" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">GC count per read</text> -<text x="630" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Theoretical Distribution</text> +<rect width="150" height="43" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="43" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">GC count per read</text> +<text x="640" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Theoretical Distribution</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_quality.png	✓	✓	✓ Diff within limits (0.8% pixels differ)
Total: 480000 px \| Differ: 3977 (0.83%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_quality.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/per_sequence_quality.svg +++ rust/Images/per_sequence_quality.svg @@ -9,10 +9,10 @@ <text x="0" y="254" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">3</text> <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">4</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">5</text> -<text x="260" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> +<text x="270" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="280" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> +<text x="300" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> <text x="400" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">9</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="10" y1="456" x2="790" y2="456" stroke="rgb(180,180,180)" stroke-width="[SW]"/> @@ -20,7 +20,7 @@ <line x1="10" y1="248" x2="790" y2="248" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="10" y1="144" x2="790" y2="144" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="10" y1="40" x2="790" y2="40" stroke="rgb(180,180,180)" stroke-width="[SW]"/> -<rect width="170" height="23" x="620" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="170" height="23" x="620" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="620" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> +<rect width="150" height="23" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="23" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/sequence_length_distribution.png	✓	✓	✓ Diff within limits (1.5% pixels differ)
Total: 480000 px \| Differ: 7188 (1.50%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/sequence_length_distribution.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/sequence_length_distribution.svg +++ rust/Images/sequence_length_distribution.svg @@ -9,10 +9,10 @@ <text x="0" y="254" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">3</text> <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">4</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">5</text> -<text x="240" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Distribution of sequence lengths over all sequences</text> +<text x="250" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Distribution of sequence lengths over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Length (bp)</text> +<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Length (bp)</text> <text x="130" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">15</text> <rect width="260" height="520" x="270" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="390" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">16</text> @@ -25,7 +25,7 @@ <line x1="10" y1="40" x2="790" y2="40" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="140" y1="560" x2="400" y2="40" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="400" y1="40" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="120" height="23" x="670" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="120" height="23" x="670" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="670" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> +<rect width="100" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="100" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="690" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust

complex_kmers5 PASS

Input: complex.fastq | Args: --kmers 5

File	Java	Rust	Status
fastqc.fo	✓	✓	✓ Identical
fastqc_data.txt	✓	✓	✓ Identical
fastqc_report.html	✓	✓	✓ Expected diff
base64-encoded PNG images replaced with placeholders
summary.txt	✓	✓	✓ Identical
Icons/error.png	✓	✓	✓ Identical
Icons/fastqc_icon.png	✓	✓	✓ Identical
Icons/tick.png	✓	✓	✓ Identical
Icons/warning.png	✓	✓	✓ Identical
Images/adapter_content.png	✓	✓	✓ Diff within limits (2.2% pixels differ)
Total: 480000 px \| Differ: 10457 (2.18%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/adapter_content.svg	✓	✓	✓ Expected diff (18 lines patched)
Identical after applying patch: --- java/Images/adapter_content.svg +++ rust/Images/adapter_content.svg @@ -17,7 +17,7 @@ <text x="380" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">% Adapter</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="150" height="520" x="180" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="250" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -60,12 +60,12 @@ <line x1="260" y1="560" x2="410" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> <line x1="410" y1="560" x2="560" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> <line x1="560" y1="560" x2="710" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> -<rect width="220" height="123" x="570" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="220" height="123" x="570" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="580" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Illumina Universal Adapter</text> -<text x="580" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Illumina Small RNA 3' Adapter</text> -<text x="580" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">Illumina Small RNA 5' Adapter</text> -<text x="580" y="115" fill="rgb(221,204,119)" font-family="[FONT]" font-size="12">Nextera Transposase Sequence</text> -<text x="580" y="135" fill="rgb(68,170,153)" font-family="[FONT]" font-size="12">PolyA</text> -<text x="580" y="155" fill="rgb(170,68,153)" font-family="[FONT]" font-size="12">PolyG</text> +<rect width="200" height="123" x="590" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="200" height="123" x="590" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="600" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Illumina Universal Adapter</text> +<text x="600" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Illumina Small RNA 3' Adapter</text> +<text x="600" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">Illumina Small RNA 5' Adapter</text> +<text x="600" y="115" fill="rgb(221,204,119)" font-family="[FONT]" font-size="12">Nextera Transposase Sequence</text> +<text x="600" y="135" fill="rgb(68,170,153)" font-family="[FONT]" font-size="12">PolyA</text> +<text x="600" y="155" fill="rgb(170,68,153)" font-family="[FONT]" font-size="12">PolyG</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/duplication_levels.png	✓	✓	✓ Diff within limits (2.1% pixels differ)
Total: 480000 px \| Differ: 9913 (2.07%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/duplication_levels.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/duplication_levels.svg +++ rust/Images/duplication_levels.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="260" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Percent of seqs remaining if deduplicated 20%</text> +<text x="270" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Percent of seqs remaining if deduplicated 20%</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="310" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> +<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -68,7 +68,7 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="130" height="23" x="660" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="130" height="23" x="660" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="660" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> +<rect width="110" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="110" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="680" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_n_content.png	✓	✓	✓ Diff within limits (1.0% pixels differ)
Total: 480000 px \| Differ: 4893 (1.02%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_n_content.svg	✓	✓	✓ Expected diff (8 lines patched)
Identical after applying patch: --- java/Images/per_base_n_content.svg +++ rust/Images/per_base_n_content.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="320" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">N content across all bases</text> +<text x="330" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">N content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -68,7 +68,7 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="30" height="23" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="30" height="23" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="23" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="23" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%N</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_quality.png	✓	✓	✓ Diff within limits (1.2% pixels differ)
Total: 480000 px \| Differ: 5740 (1.20%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_quality.svg	✓	✓	✓ Expected diff (2 lines patched)
Identical after applying patch: --- java/Images/per_base_quality.svg +++ rust/Images/per_base_quality.svg @@ -88,7 +88,7 @@ <text x="760" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">16</text> <line x1="20" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="20" y1="560" x2="20" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <rect width="40" height="0" x="20" y="560" style="fill:rgb(240,240,0);stroke:none"/> <rect width="40" height="0" x="20" y="560" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(0,0,0)"/> <line x1="40" y1="560" x2="40" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_sequence_content.png	✓	✓	✓ Diff within limits (10.0% pixels differ)
Total: 480000 px \| Differ: 48167 (10.03%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_sequence_content.svg	✓	✓	✓ Expected diff (8 lines patched)
Identical after applying patch: --- java/Images/per_base_sequence_content.svg +++ rust/Images/per_base_sequence_content.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="300" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence content across all bases</text> +<text x="310" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -113,8 +113,8 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="40" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="710" y1="40" x2="760" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> -<rect width="30" height="83" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="30" height="83" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="83" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="83" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%T</text> <text x="770" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">%C</text> <text x="770" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">%A</text> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_gc_content.png	✓	✓	✓ Diff within limits (2.5% pixels differ)
Total: 480000 px \| Differ: 11780 (2.45%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_gc_content.svg	✓	✓	✓ Expected diff (12 lines patched)
Identical after applying patch: --- java/Images/per_sequence_gc_content.svg +++ rust/Images/per_sequence_gc_content.svg @@ -10,10 +10,10 @@ <text x="0" y="252" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">4</text> <text x="0" y="173" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">5</text> <text x="0" y="95" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">6</text> -<text x="290" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">GC distribution over all sequences</text> +<text x="300" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">GC distribution over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> <text x="10" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <rect width="10" height="520" x="20" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="30" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -299,8 +299,8 @@ <line x1="700" y1="560" x2="700" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="700" y1="560" x2="710" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="720" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> -<rect width="160" height="43" x="630" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="160" height="43" x="630" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="630" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">GC count per read</text> -<text x="630" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Theoretical Distribution</text> +<rect width="150" height="43" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="43" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">GC count per read</text> +<text x="640" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Theoretical Distribution</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_quality.png	✓	✓	✓ Diff within limits (0.8% pixels differ)
Total: 480000 px \| Differ: 3977 (0.83%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_quality.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/per_sequence_quality.svg +++ rust/Images/per_sequence_quality.svg @@ -9,10 +9,10 @@ <text x="0" y="254" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">3</text> <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">4</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">5</text> -<text x="260" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> +<text x="270" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="280" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> +<text x="300" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> <text x="400" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">9</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="10" y1="456" x2="790" y2="456" stroke="rgb(180,180,180)" stroke-width="[SW]"/> @@ -20,7 +20,7 @@ <line x1="10" y1="248" x2="790" y2="248" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="10" y1="144" x2="790" y2="144" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="10" y1="40" x2="790" y2="40" stroke="rgb(180,180,180)" stroke-width="[SW]"/> -<rect width="170" height="23" x="620" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="170" height="23" x="620" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="620" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> +<rect width="150" height="23" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="23" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/sequence_length_distribution.png	✓	✓	✓ Diff within limits (1.5% pixels differ)
Total: 480000 px \| Differ: 7188 (1.50%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/sequence_length_distribution.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/sequence_length_distribution.svg +++ rust/Images/sequence_length_distribution.svg @@ -9,10 +9,10 @@ <text x="0" y="254" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">3</text> <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">4</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">5</text> -<text x="240" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Distribution of sequence lengths over all sequences</text> +<text x="250" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Distribution of sequence lengths over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Length (bp)</text> +<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Length (bp)</text> <text x="130" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">15</text> <rect width="260" height="520" x="270" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="390" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">16</text> @@ -25,7 +25,7 @@ <line x1="10" y1="40" x2="790" y2="40" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="140" y1="560" x2="400" y2="40" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="400" y1="40" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="120" height="23" x="670" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="120" height="23" x="670" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="670" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> +<rect width="100" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="100" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="690" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust

complex_kmers10 PASS

Input: complex.fastq | Args: --kmers 10

File	Java	Rust	Status
fastqc.fo	✓	✓	✓ Identical
fastqc_data.txt	✓	✓	✓ Identical
fastqc_report.html	✓	✓	✓ Expected diff
base64-encoded PNG images replaced with placeholders
summary.txt	✓	✓	✓ Identical
Icons/error.png	✓	✓	✓ Identical
Icons/fastqc_icon.png	✓	✓	✓ Identical
Icons/tick.png	✓	✓	✓ Identical
Icons/warning.png	✓	✓	✓ Identical
Images/adapter_content.png	✓	✓	✓ Diff within limits (2.2% pixels differ)
Total: 480000 px \| Differ: 10457 (2.18%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/adapter_content.svg	✓	✓	✓ Expected diff (18 lines patched)
Identical after applying patch: --- java/Images/adapter_content.svg +++ rust/Images/adapter_content.svg @@ -17,7 +17,7 @@ <text x="380" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">% Adapter</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="150" height="520" x="180" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="250" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -60,12 +60,12 @@ <line x1="260" y1="560" x2="410" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> <line x1="410" y1="560" x2="560" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> <line x1="560" y1="560" x2="710" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> -<rect width="220" height="123" x="570" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="220" height="123" x="570" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="580" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Illumina Universal Adapter</text> -<text x="580" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Illumina Small RNA 3' Adapter</text> -<text x="580" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">Illumina Small RNA 5' Adapter</text> -<text x="580" y="115" fill="rgb(221,204,119)" font-family="[FONT]" font-size="12">Nextera Transposase Sequence</text> -<text x="580" y="135" fill="rgb(68,170,153)" font-family="[FONT]" font-size="12">PolyA</text> -<text x="580" y="155" fill="rgb(170,68,153)" font-family="[FONT]" font-size="12">PolyG</text> +<rect width="200" height="123" x="590" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="200" height="123" x="590" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="600" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Illumina Universal Adapter</text> +<text x="600" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Illumina Small RNA 3' Adapter</text> +<text x="600" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">Illumina Small RNA 5' Adapter</text> +<text x="600" y="115" fill="rgb(221,204,119)" font-family="[FONT]" font-size="12">Nextera Transposase Sequence</text> +<text x="600" y="135" fill="rgb(68,170,153)" font-family="[FONT]" font-size="12">PolyA</text> +<text x="600" y="155" fill="rgb(170,68,153)" font-family="[FONT]" font-size="12">PolyG</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/duplication_levels.png	✓	✓	✓ Diff within limits (2.1% pixels differ)
Total: 480000 px \| Differ: 9913 (2.07%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/duplication_levels.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/duplication_levels.svg +++ rust/Images/duplication_levels.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="260" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Percent of seqs remaining if deduplicated 20%</text> +<text x="270" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Percent of seqs remaining if deduplicated 20%</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="310" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> +<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -68,7 +68,7 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="130" height="23" x="660" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="130" height="23" x="660" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="660" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> +<rect width="110" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="110" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="680" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_n_content.png	✓	✓	✓ Diff within limits (1.0% pixels differ)
Total: 480000 px \| Differ: 4893 (1.02%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_n_content.svg	✓	✓	✓ Expected diff (8 lines patched)
Identical after applying patch: --- java/Images/per_base_n_content.svg +++ rust/Images/per_base_n_content.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="320" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">N content across all bases</text> +<text x="330" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">N content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -68,7 +68,7 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="30" height="23" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="30" height="23" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="23" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="23" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%N</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_quality.png	✓	✓	✓ Diff within limits (1.2% pixels differ)
Total: 480000 px \| Differ: 5740 (1.20%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_quality.svg	✓	✓	✓ Expected diff (2 lines patched)
Identical after applying patch: --- java/Images/per_base_quality.svg +++ rust/Images/per_base_quality.svg @@ -88,7 +88,7 @@ <text x="760" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">16</text> <line x1="20" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="20" y1="560" x2="20" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <rect width="40" height="0" x="20" y="560" style="fill:rgb(240,240,0);stroke:none"/> <rect width="40" height="0" x="20" y="560" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(0,0,0)"/> <line x1="40" y1="560" x2="40" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_sequence_content.png	✓	✓	✓ Diff within limits (10.0% pixels differ)
Total: 480000 px \| Differ: 48167 (10.03%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_sequence_content.svg	✓	✓	✓ Expected diff (8 lines patched)
Identical after applying patch: --- java/Images/per_base_sequence_content.svg +++ rust/Images/per_base_sequence_content.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="300" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence content across all bases</text> +<text x="310" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -113,8 +113,8 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="40" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="710" y1="40" x2="760" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> -<rect width="30" height="83" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="30" height="83" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="83" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="83" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%T</text> <text x="770" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">%C</text> <text x="770" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">%A</text> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_gc_content.png	✓	✓	✓ Diff within limits (2.5% pixels differ)
Total: 480000 px \| Differ: 11780 (2.45%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_gc_content.svg	✓	✓	✓ Expected diff (12 lines patched)
Identical after applying patch: --- java/Images/per_sequence_gc_content.svg +++ rust/Images/per_sequence_gc_content.svg @@ -10,10 +10,10 @@ <text x="0" y="252" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">4</text> <text x="0" y="173" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">5</text> <text x="0" y="95" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">6</text> -<text x="290" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">GC distribution over all sequences</text> +<text x="300" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">GC distribution over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> <text x="10" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <rect width="10" height="520" x="20" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="30" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -299,8 +299,8 @@ <line x1="700" y1="560" x2="700" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="700" y1="560" x2="710" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="720" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> -<rect width="160" height="43" x="630" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="160" height="43" x="630" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="630" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">GC count per read</text> -<text x="630" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Theoretical Distribution</text> +<rect width="150" height="43" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="43" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">GC count per read</text> +<text x="640" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Theoretical Distribution</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_quality.png	✓	✓	✓ Diff within limits (0.8% pixels differ)
Total: 480000 px \| Differ: 3977 (0.83%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_quality.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/per_sequence_quality.svg +++ rust/Images/per_sequence_quality.svg @@ -9,10 +9,10 @@ <text x="0" y="254" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">3</text> <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">4</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">5</text> -<text x="260" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> +<text x="270" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="280" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> +<text x="300" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> <text x="400" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">9</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="10" y1="456" x2="790" y2="456" stroke="rgb(180,180,180)" stroke-width="[SW]"/> @@ -20,7 +20,7 @@ <line x1="10" y1="248" x2="790" y2="248" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="10" y1="144" x2="790" y2="144" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="10" y1="40" x2="790" y2="40" stroke="rgb(180,180,180)" stroke-width="[SW]"/> -<rect width="170" height="23" x="620" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="170" height="23" x="620" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="620" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> +<rect width="150" height="23" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="23" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/sequence_length_distribution.png	✓	✓	✓ Diff within limits (1.5% pixels differ)
Total: 480000 px \| Differ: 7188 (1.50%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/sequence_length_distribution.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/sequence_length_distribution.svg +++ rust/Images/sequence_length_distribution.svg @@ -9,10 +9,10 @@ <text x="0" y="254" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">3</text> <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">4</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">5</text> -<text x="240" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Distribution of sequence lengths over all sequences</text> +<text x="250" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Distribution of sequence lengths over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Length (bp)</text> +<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Length (bp)</text> <text x="130" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">15</text> <rect width="260" height="520" x="270" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="390" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">16</text> @@ -25,7 +25,7 @@ <line x1="10" y1="40" x2="790" y2="40" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="140" y1="560" x2="400" y2="40" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="400" y1="40" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="120" height="23" x="670" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="120" height="23" x="670" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="670" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> +<rect width="100" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="100" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="690" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust

complex_min_length_10 PASS

Input: complex.fastq | Args: --min_length 10

File	Java	Rust	Status
fastqc.fo	✓	✓	✓ Identical
fastqc_data.txt	✓	✓	✓ Identical
fastqc_report.html	✓	✓	✓ Expected diff
base64-encoded PNG images replaced with placeholders
summary.txt	✓	✓	✓ Identical
Icons/error.png	✓	✓	✓ Identical
Icons/fastqc_icon.png	✓	✓	✓ Identical
Icons/tick.png	✓	✓	✓ Identical
Icons/warning.png	✓	✓	✓ Identical
Images/adapter_content.png	✓	✓	✓ Diff within limits (2.3% pixels differ)
Total: 480000 px \| Differ: 10837 (2.26%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/adapter_content.svg	✓	✓	✓ Expected diff (18 lines patched)
Identical after applying patch: --- java/Images/adapter_content.svg +++ rust/Images/adapter_content.svg @@ -17,7 +17,7 @@ <text x="380" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">% Adapter</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="60" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="80" height="520" x="100" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="140" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -98,12 +98,12 @@ <line x1="520" y1="560" x2="600" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> <line x1="600" y1="560" x2="680" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> <line x1="680" y1="560" x2="750" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> -<rect width="220" height="123" x="570" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="220" height="123" x="570" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="580" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Illumina Universal Adapter</text> -<text x="580" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Illumina Small RNA 3' Adapter</text> -<text x="580" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">Illumina Small RNA 5' Adapter</text> -<text x="580" y="115" fill="rgb(221,204,119)" font-family="[FONT]" font-size="12">Nextera Transposase Sequence</text> -<text x="580" y="135" fill="rgb(68,170,153)" font-family="[FONT]" font-size="12">PolyA</text> -<text x="580" y="155" fill="rgb(170,68,153)" font-family="[FONT]" font-size="12">PolyG</text> +<rect width="200" height="123" x="590" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="200" height="123" x="590" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="600" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Illumina Universal Adapter</text> +<text x="600" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Illumina Small RNA 3' Adapter</text> +<text x="600" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">Illumina Small RNA 5' Adapter</text> +<text x="600" y="115" fill="rgb(221,204,119)" font-family="[FONT]" font-size="12">Nextera Transposase Sequence</text> +<text x="600" y="135" fill="rgb(68,170,153)" font-family="[FONT]" font-size="12">PolyA</text> +<text x="600" y="155" fill="rgb(170,68,153)" font-family="[FONT]" font-size="12">PolyG</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/duplication_levels.png	✓	✓	✓ Diff within limits (2.1% pixels differ)
Total: 480000 px \| Differ: 9913 (2.07%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/duplication_levels.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/duplication_levels.svg +++ rust/Images/duplication_levels.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="260" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Percent of seqs remaining if deduplicated 20%</text> +<text x="270" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Percent of seqs remaining if deduplicated 20%</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="310" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> +<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -68,7 +68,7 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="130" height="23" x="660" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="130" height="23" x="660" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="660" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> +<rect width="110" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="110" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="680" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_n_content.png	✓	✓	✓ Diff within limits (1.0% pixels differ)
Total: 480000 px \| Differ: 4893 (1.02%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_n_content.svg	✓	✓	✓ Expected diff (8 lines patched)
Identical after applying patch: --- java/Images/per_base_n_content.svg +++ rust/Images/per_base_n_content.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="320" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">N content across all bases</text> +<text x="330" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">N content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -68,7 +68,7 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="30" height="23" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="30" height="23" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="23" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="23" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%N</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_quality.png	✓	✓	✓ Diff within limits (1.2% pixels differ)
Total: 480000 px \| Differ: 5740 (1.20%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_quality.svg	✓	✓	✓ Expected diff (2 lines patched)
Identical after applying patch: --- java/Images/per_base_quality.svg +++ rust/Images/per_base_quality.svg @@ -88,7 +88,7 @@ <text x="760" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">16</text> <line x1="20" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="20" y1="560" x2="20" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <rect width="40" height="0" x="20" y="560" style="fill:rgb(240,240,0);stroke:none"/> <rect width="40" height="0" x="20" y="560" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(0,0,0)"/> <line x1="40" y1="560" x2="40" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_sequence_content.png	✓	✓	✓ Diff within limits (10.0% pixels differ)
Total: 480000 px \| Differ: 48167 (10.03%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_sequence_content.svg	✓	✓	✓ Expected diff (8 lines patched)
Identical after applying patch: --- java/Images/per_base_sequence_content.svg +++ rust/Images/per_base_sequence_content.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="300" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence content across all bases</text> +<text x="310" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -113,8 +113,8 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="40" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="710" y1="40" x2="760" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> -<rect width="30" height="83" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="30" height="83" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="83" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="83" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%T</text> <text x="770" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">%C</text> <text x="770" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">%A</text> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_gc_content.png	✓	✓	✓ Diff within limits (2.5% pixels differ)
Total: 480000 px \| Differ: 11780 (2.45%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_gc_content.svg	✓	✓	✓ Expected diff (12 lines patched)
Identical after applying patch: --- java/Images/per_sequence_gc_content.svg +++ rust/Images/per_sequence_gc_content.svg @@ -10,10 +10,10 @@ <text x="0" y="252" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">4</text> <text x="0" y="173" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">5</text> <text x="0" y="95" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">6</text> -<text x="290" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">GC distribution over all sequences</text> +<text x="300" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">GC distribution over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> <text x="10" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <rect width="10" height="520" x="20" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="30" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -299,8 +299,8 @@ <line x1="700" y1="560" x2="700" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="700" y1="560" x2="710" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="720" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> -<rect width="160" height="43" x="630" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="160" height="43" x="630" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="630" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">GC count per read</text> -<text x="630" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Theoretical Distribution</text> +<rect width="150" height="43" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="43" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">GC count per read</text> +<text x="640" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Theoretical Distribution</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_quality.png	✓	✓	✓ Diff within limits (0.8% pixels differ)
Total: 480000 px \| Differ: 3977 (0.83%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_quality.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/per_sequence_quality.svg +++ rust/Images/per_sequence_quality.svg @@ -9,10 +9,10 @@ <text x="0" y="254" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">3</text> <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">4</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">5</text> -<text x="260" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> +<text x="270" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="280" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> +<text x="300" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> <text x="400" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">9</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="10" y1="456" x2="790" y2="456" stroke="rgb(180,180,180)" stroke-width="[SW]"/> @@ -20,7 +20,7 @@ <line x1="10" y1="248" x2="790" y2="248" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="10" y1="144" x2="790" y2="144" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="10" y1="40" x2="790" y2="40" stroke="rgb(180,180,180)" stroke-width="[SW]"/> -<rect width="170" height="23" x="620" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="170" height="23" x="620" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="620" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> +<rect width="150" height="23" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="23" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/sequence_length_distribution.png	✓	✓	✓ Diff within limits (1.5% pixels differ)
Total: 480000 px \| Differ: 7188 (1.50%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/sequence_length_distribution.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/sequence_length_distribution.svg +++ rust/Images/sequence_length_distribution.svg @@ -9,10 +9,10 @@ <text x="0" y="254" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">3</text> <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">4</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">5</text> -<text x="240" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Distribution of sequence lengths over all sequences</text> +<text x="250" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Distribution of sequence lengths over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Length (bp)</text> +<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Length (bp)</text> <text x="130" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">15</text> <rect width="260" height="520" x="270" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="390" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">16</text> @@ -25,7 +25,7 @@ <line x1="10" y1="40" x2="790" y2="40" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="140" y1="560" x2="400" y2="40" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="400" y1="40" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="120" height="23" x="670" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="120" height="23" x="670" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="670" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> +<rect width="100" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="100" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="690" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust

complex_dup_length_10 PASS

Input: complex.fastq | Args: --dup_length 10

File	Java	Rust	Status
fastqc.fo	✓	✓	✓ Identical
fastqc_data.txt	✓	✓	✓ Identical
fastqc_report.html	✓	✓	✓ Expected diff
base64-encoded PNG images replaced with placeholders
summary.txt	✓	✓	✓ Identical
Icons/error.png	✓	✓	✓ Identical
Icons/fastqc_icon.png	✓	✓	✓ Identical
Icons/tick.png	✓	✓	✓ Identical
Icons/warning.png	✓	✓	✓ Identical
Images/adapter_content.png	✓	✓	✓ Diff within limits (2.2% pixels differ)
Total: 480000 px \| Differ: 10457 (2.18%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/adapter_content.svg	✓	✓	✓ Expected diff (18 lines patched)
Identical after applying patch: --- java/Images/adapter_content.svg +++ rust/Images/adapter_content.svg @@ -17,7 +17,7 @@ <text x="380" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">% Adapter</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="150" height="520" x="180" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="250" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -60,12 +60,12 @@ <line x1="260" y1="560" x2="410" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> <line x1="410" y1="560" x2="560" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> <line x1="560" y1="560" x2="710" y2="560" stroke="rgb(170,68,153)" stroke-width="[SW]"/> -<rect width="220" height="123" x="570" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="220" height="123" x="570" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="580" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Illumina Universal Adapter</text> -<text x="580" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Illumina Small RNA 3' Adapter</text> -<text x="580" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">Illumina Small RNA 5' Adapter</text> -<text x="580" y="115" fill="rgb(221,204,119)" font-family="[FONT]" font-size="12">Nextera Transposase Sequence</text> -<text x="580" y="135" fill="rgb(68,170,153)" font-family="[FONT]" font-size="12">PolyA</text> -<text x="580" y="155" fill="rgb(170,68,153)" font-family="[FONT]" font-size="12">PolyG</text> +<rect width="200" height="123" x="590" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="200" height="123" x="590" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="600" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Illumina Universal Adapter</text> +<text x="600" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Illumina Small RNA 3' Adapter</text> +<text x="600" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">Illumina Small RNA 5' Adapter</text> +<text x="600" y="115" fill="rgb(221,204,119)" font-family="[FONT]" font-size="12">Nextera Transposase Sequence</text> +<text x="600" y="135" fill="rgb(68,170,153)" font-family="[FONT]" font-size="12">PolyA</text> +<text x="600" y="155" fill="rgb(170,68,153)" font-family="[FONT]" font-size="12">PolyG</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/duplication_levels.png	✓	✓	✓ Diff within limits (2.1% pixels differ)
Total: 480000 px \| Differ: 9913 (2.07%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/duplication_levels.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/duplication_levels.svg +++ rust/Images/duplication_levels.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="260" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Percent of seqs remaining if deduplicated 20%</text> +<text x="270" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Percent of seqs remaining if deduplicated 20%</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="310" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> +<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -68,7 +68,7 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="130" height="23" x="660" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="130" height="23" x="660" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="660" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> +<rect width="110" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="110" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="680" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_n_content.png	✓	✓	✓ Diff within limits (1.0% pixels differ)
Total: 480000 px \| Differ: 4893 (1.02%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_n_content.svg	✓	✓	✓ Expected diff (8 lines patched)
Identical after applying patch: --- java/Images/per_base_n_content.svg +++ rust/Images/per_base_n_content.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="320" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">N content across all bases</text> +<text x="330" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">N content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -68,7 +68,7 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="30" height="23" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="30" height="23" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="23" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="23" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%N</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_quality.png	✓	✓	✓ Diff within limits (1.2% pixels differ)
Total: 480000 px \| Differ: 5740 (1.20%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_quality.svg	✓	✓	✓ Expected diff (2 lines patched)
Identical after applying patch: --- java/Images/per_base_quality.svg +++ rust/Images/per_base_quality.svg @@ -88,7 +88,7 @@ <text x="760" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">16</text> <line x1="20" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="20" y1="560" x2="20" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <rect width="40" height="0" x="20" y="560" style="fill:rgb(240,240,0);stroke:none"/> <rect width="40" height="0" x="20" y="560" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(0,0,0)"/> <line x1="40" y1="560" x2="40" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_sequence_content.png	✓	✓	✓ Diff within limits (10.0% pixels differ)
Total: 480000 px \| Differ: 48167 (10.03%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_sequence_content.svg	✓	✓	✓ Expected diff (8 lines patched)
Identical after applying patch: --- java/Images/per_base_sequence_content.svg +++ rust/Images/per_base_sequence_content.svg @@ -14,10 +14,10 @@ <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">80</text> <text x="0" y="98" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">90</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">100</text> -<text x="300" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence content across all bases</text> +<text x="310" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -113,8 +113,8 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="40" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="710" y1="40" x2="760" y2="560" stroke="rgb(221,204,119)" stroke-width="[SW]"/> -<rect width="30" height="83" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="30" height="83" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="83" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="83" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%T</text> <text x="770" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">%C</text> <text x="770" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">%A</text> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_gc_content.png	✓	✓	✓ Diff within limits (2.5% pixels differ)
Total: 480000 px \| Differ: 11780 (2.45%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_gc_content.svg	✓	✓	✓ Expected diff (12 lines patched)
Identical after applying patch: --- java/Images/per_sequence_gc_content.svg +++ rust/Images/per_sequence_gc_content.svg @@ -10,10 +10,10 @@ <text x="0" y="252" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">4</text> <text x="0" y="173" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">5</text> <text x="0" y="95" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">6</text> -<text x="290" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">GC distribution over all sequences</text> +<text x="300" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">GC distribution over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> <text x="10" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <rect width="10" height="520" x="20" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="30" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -299,8 +299,8 @@ <line x1="700" y1="560" x2="700" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="700" y1="560" x2="710" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="720" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> -<rect width="160" height="43" x="630" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="160" height="43" x="630" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="630" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">GC count per read</text> -<text x="630" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Theoretical Distribution</text> +<rect width="150" height="43" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="43" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">GC count per read</text> +<text x="640" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Theoretical Distribution</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_quality.png	✓	✓	✓ Diff within limits (0.8% pixels differ)
Total: 480000 px \| Differ: 3977 (0.83%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_quality.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/per_sequence_quality.svg +++ rust/Images/per_sequence_quality.svg @@ -9,10 +9,10 @@ <text x="0" y="254" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">3</text> <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">4</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">5</text> -<text x="260" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> +<text x="270" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="280" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> +<text x="300" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> <text x="400" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">9</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="10" y1="456" x2="790" y2="456" stroke="rgb(180,180,180)" stroke-width="[SW]"/> @@ -20,7 +20,7 @@ <line x1="10" y1="248" x2="790" y2="248" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="10" y1="144" x2="790" y2="144" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="10" y1="40" x2="790" y2="40" stroke="rgb(180,180,180)" stroke-width="[SW]"/> -<rect width="170" height="23" x="620" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="170" height="23" x="620" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="620" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> +<rect width="150" height="23" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="23" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/sequence_length_distribution.png	✓	✓	✓ Diff within limits (1.5% pixels differ)
Total: 480000 px \| Differ: 7188 (1.50%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/sequence_length_distribution.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/sequence_length_distribution.svg +++ rust/Images/sequence_length_distribution.svg @@ -9,10 +9,10 @@ <text x="0" y="254" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">3</text> <text x="0" y="150" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">4</text> <text x="0" y="46" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">5</text> -<text x="240" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Distribution of sequence lengths over all sequences</text> +<text x="250" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Distribution of sequence lengths over all sequences</text> <line x1="10" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="10" y1="560" x2="10" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Length (bp)</text> +<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Length (bp)</text> <text x="130" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">15</text> <rect width="260" height="520" x="270" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="390" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">16</text> @@ -25,7 +25,7 @@ <line x1="10" y1="40" x2="790" y2="40" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="140" y1="560" x2="400" y2="40" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="400" y1="40" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="120" height="23" x="670" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="120" height="23" x="670" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="670" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> +<rect width="100" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="100" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="690" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust

realistic_default PASS

Input: realistic.fastq.gz | Args: (default)

File	Java	Rust	Status
fastqc.fo	✓	✓	✓ Identical
fastqc_data.txt	✓	✓	✓ Identical
fastqc_report.html	✓	✓	✓ Expected diff
base64-encoded PNG images replaced with placeholders
summary.txt	✓	✓	✓ Identical
Icons/error.png	✗	✓	✗ Only in Rust
Icons/fastqc_icon.png	✗	✓	✗ Only in Rust
Icons/tick.png	✗	✓	✗ Only in Rust
Icons/warning.png	✗	✓	✗ Only in Rust
Images/adapter_content.png	✓	✓	✓ Diff within limits (2.4% pixels differ)
Total: 480000 px \| Differ: 11598 (2.42%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/adapter_content.svg	✓	✓	✓ Expected diff (2 lines patched)
Identical after applying patch: --- java/Images/adapter_content.svg +++ rust/Images/adapter_content.svg @@ -17,7 +17,7 @@ <text x="380" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">% Adapter</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="30" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="20" height="520" x="50" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/duplication_levels.png	✓	✓	✓ Diff within limits (2.0% pixels differ)
Total: 480000 px \| Differ: 9812 (2.04%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/duplication_levels.svg	✓	✓	✓ Expected diff (8 lines patched)
Identical after applying patch: --- java/Images/duplication_levels.svg +++ rust/Images/duplication_levels.svg @@ -17,7 +17,7 @@ <text x="260" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Percent of seqs remaining if deduplicated 87.81%</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="320" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> +<text x="330" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence Duplication Level</text> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="50" height="520" x="80" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="100" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -68,7 +68,7 @@ <line x1="620" y1="560" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="660" y1="560" x2="710" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="710" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="120" height="23" x="670" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="120" height="23" x="670" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="670" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> +<rect width="110" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="110" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="680" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">% Total sequences</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_n_content.png	✓	✓	✓ Diff within limits (1.5% pixels differ)
Total: 480000 px \| Differ: 7132 (1.49%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_n_content.svg	✓	✓	✓ Expected diff (6 lines patched)
Identical after applying patch: --- java/Images/per_base_n_content.svg +++ rust/Images/per_base_n_content.svg @@ -17,7 +17,7 @@ <text x="330" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">N content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="30" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="20" height="520" x="40" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -132,7 +132,7 @@ <line x1="730" y1="560" x2="740" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="740" y1="560" x2="760" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="760" y1="560" x2="770" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="20" height="23" x="770" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="20" height="23" x="770" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="23" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="23" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%N</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_quality.png	✓	✓	✓ Diff within limits (1.7% pixels differ)
Total: 480000 px \| Differ: 8275 (1.72%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_quality.svg	✓	✓	✓ Expected diff (4 lines patched)
Identical after applying patch: --- java/Images/per_base_quality.svg +++ rust/Images/per_base_quality.svg @@ -21,7 +21,7 @@ <text x="0" y="121" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">30</text> <text x="0" y="91" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">32</text> <text x="0" y="61" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">34</text> -<text x="250" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality scores across all bases (Illumina 1.5 encoding)</text> +<text x="240" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality scores across all bases (Illumina 1.5 encoding)</text> <rect width="20" height="297" x="20" y="263" style="fill:rgb(230,175,175);stroke:none"/> <rect width="20" height="119" x="20" y="144" style="fill:rgb(230,215,175);stroke:none"/> <rect width="20" height="104" x="20" y="40" style="fill:rgb(175,230,175);stroke:none"/> @@ -203,7 +203,7 @@ <rect width="20" height="104" x="760" y="40" style="fill:rgb(195,230,195);stroke:none"/> <line x1="20" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="20" y1="560" x2="20" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <rect width="10" height="0" x="20" y="427" style="fill:rgb(240,240,0);stroke:none"/> <rect width="10" height="0" x="20" y="427" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(0,0,0)"/> <line x1="30" y1="427" x2="30" y2="427" stroke="rgb(0,0,0)" stroke-width="[SW]"/> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_base_sequence_content.png	✓	✓	✓ Diff within limits (4.4% pixels differ)
Total: 480000 px \| Differ: 21213 (4.42%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_base_sequence_content.svg	✓	✓	✓ Expected diff (6 lines patched)
Identical after applying patch: --- java/Images/per_base_sequence_content.svg +++ rust/Images/per_base_sequence_content.svg @@ -17,7 +17,7 @@ <text x="310" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Sequence content across all bases</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Position in read (bp)</text> <text x="30" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1</text> <rect width="20" height="520" x="40" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="50" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -279,8 +279,8 @@ <line x1="730" y1="443" x2="740" y2="446" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="740" y1="446" x2="760" y2="443" stroke="rgb(221,204,119)" stroke-width="[SW]"/> <line x1="760" y1="443" x2="770" y2="448" stroke="rgb(221,204,119)" stroke-width="[SW]"/> -<rect width="20" height="83" x="770" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="20" height="83" x="770" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="20" height="83" x="760" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="20" height="83" x="760" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="770" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">%T</text> <text x="770" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">%C</text> <text x="770" y="95" fill="rgb(17,119,51)" font-family="[FONT]" font-size="12">%A</text> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_gc_content.png	✓	✓	✓ Diff within limits (3.1% pixels differ)
Total: 480000 px \| Differ: 14705 (3.06%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_gc_content.svg	✓	✓	✓ Expected diff (6 lines patched)
Identical after applying patch: --- java/Images/per_sequence_gc_content.svg +++ rust/Images/per_sequence_gc_content.svg @@ -15,7 +15,7 @@ <text x="310" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">GC distribution over all sequences</text> <line x1="30" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="30" y1="560" x2="30" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="340" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> +<text x="350" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean GC content (%)</text> <text x="30" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">0</text> <rect width="10" height="520" x="40" y="40" style="fill:rgb(230,230,230);stroke:none"/> <text x="40" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">2</text> @@ -303,8 +303,8 @@ <line x1="710" y1="560" x2="720" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="720" y1="560" x2="720" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> <line x1="720" y1="560" x2="730" y2="560" stroke="rgb(51,34,136)" stroke-width="[SW]"/> -<rect width="160" height="43" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="160" height="43" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<rect width="150" height="43" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="43" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> <text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">GC count per read</text> <text x="640" y="75" fill="rgb(51,34,136)" font-family="[FONT]" font-size="12">Theoretical Distribution</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/per_sequence_quality.png	✓	✓	✓ Diff within limits (1.2% pixels differ)
Total: 480000 px \| Differ: 5525 (1.15%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/per_sequence_quality.svg	✓	✓	✓ Expected diff (10 lines patched)
Identical after applying patch: --- java/Images/per_sequence_quality.svg +++ rust/Images/per_sequence_quality.svg @@ -9,10 +9,10 @@ <text x="0" y="257" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">600</text> <text x="0" y="154" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">800</text> <text x="0" y="51" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">1000</text> -<text x="290" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> +<text x="280" y="30" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Quality score distribution over all sequences</text> <line x1="40" y1="560" x2="790" y2="560" stroke="rgb(0,0,0)" stroke-width="[SW]"/> <line x1="40" y1="560" x2="40" y2="40" stroke="rgb(0,0,0)" stroke-width="[SW]"/> -<text x="290" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> +<text x="300" y="595" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">Mean Sequence Quality (Phred Score)</text> <text x="410" y="575" fill="rgb(0,0,0)" font-family="[FONT]" font-size="12">9</text> <line x1="40" y1="560" x2="790" y2="560" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="40" y1="457" x2="790" y2="457" stroke="rgb(180,180,180)" stroke-width="[SW]"/> @@ -20,7 +20,7 @@ <line x1="40" y1="251" x2="790" y2="251" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="40" y1="148" x2="790" y2="148" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="40" y1="45" x2="790" y2="45" stroke="rgb(180,180,180)" stroke-width="[SW]"/> -<rect width="160" height="23" x="630" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="160" height="23" x="630" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="630" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> +<rect width="150" height="23" x="640" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="150" height="23" x="640" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="640" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Average Quality per read</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust
Images/sequence_length_distribution.png	✓	✓	✓ Diff within limits (1.8% pixels differ)
Total: 480000 px \| Differ: 8655 (1.80%) \| Max channel diff: 255 Java Rust Pixel Diff ◀▶ Rust Java Rust Java Red = only in Java, Green = only in Rust.
Images/sequence_length_distribution.svg	✓	✓	✓ Expected diff (6 lines patched)
Identical after applying patch: --- java/Images/sequence_length_distribution.svg +++ rust/Images/sequence_length_distribution.svg @@ -25,7 +25,7 @@ <line x1="40" y1="45" x2="790" y2="45" stroke="rgb(180,180,180)" stroke-width="[SW]"/> <line x1="160" y1="560" x2="410" y2="40" stroke="rgb(136,34,85)" stroke-width="[SW]"/> <line x1="410" y1="40" x2="660" y2="560" stroke="rgb(136,34,85)" stroke-width="[SW]"/> -<rect width="110" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> -<rect width="110" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> -<text x="680" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> +<rect width="100" height="23" x="680" y="40" style="fill:rgb(255,255,255);stroke:none"/> +<rect width="100" height="23" x="680" y="40" rx="0" ry="0" style="fill:none;stroke-width:1;stroke:rgb(192,192,192)"/> +<text x="690" y="55" fill="rgb(136,34,85)" font-family="[FONT]" font-size="12">Sequence Length</text> </svg> font-family attributes normalized font-weight attributes stripped stroke-width attributes normalized x-coordinates snapped to nearest 10px Java Rust

Known Differences

The following differences between Java and Rust output are expected and normalized during comparison. SVG files that show as "Expected diff" or "NORMALIZED" have had these normalizations applied before diffing.

Font family

Java uses Arial (system font). Rust uses 'Liberation Sans', Arial, Helvetica, sans-serif (bundled Liberation Sans, metric-compatible with Arial). The font-family attribute is normalized to [FONT] before comparison.

font-weight="bold" on titles

Rust renders chart titles with font-weight="bold" for visual correctness. Java's SVGGenerator doesn't capture the bold attribute in the SVG output (though the rendered PNG uses bold). The bold attribute is stripped before comparison.

stroke-width on data lines

Java's SVGGenerator captures data lines with stroke-width="1", but the actual PNG rendering uses BasicStroke(2) for 2px-wide lines. Rust uses stroke-width="2" in the SVG so the PNG output matches Java visually. The stroke-width attribute is normalized before comparison.

SVG x-coordinate snapping

Text positioning in SVG depends on precise font metrics. Java uses FontMetrics.stringWidth() with the actual Arial font, while Rust approximates character widths. This produces 1-7px differences in text element x-coordinates (titles, axis labels, legend positions). Coordinates are snapped to the nearest 10px before comparison to absorb these differences.

PNG rendering engine differences

Java renders PNGs via Java2D, Rust via resvg + tiny-skia. Even with identical SVG coordinates, subpixel antialiasing differs between the two engines. This produces ~1-2% pixel differences on most charts, and up to ~10% on charts with many diagonal data lines. The pixel tolerance threshold is 12.0%.

Upstream font bundling

s-andrews/FastQC#185 (merged) bundles Liberation Sans in Java FastQC, matching the font used by this Rust rewrite. Once the reference data is regenerated from a release that includes this change, many SVG differences caused by font-metric mismatches (x-coordinate positioning, legend box sizing, title centering) should be eliminated or significantly reduced.

FastQC Equivalence Report